Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D8W entry

There are 3 chains in PDB entry 6D8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	TYR 484
B	GLY 1	LEU 496
C	SER 2	HIS 354

There are 46 helices in PDB entry 6D8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	65	Right-handed alpha
Helix 2	AA2	A	66	75	Right-handed 310
Helix 3	AA3	A	99	108	Right-handed alpha
Helix 4	AA4	A	186	195	Right-handed alpha
Helix 5	AA5	A	366	388	Right-handed alpha
Helix 6	AA6	A	403	453	Right-handed alpha
Helix 7	AA7	A	472	482	Right-handed alpha
Helix 8	AA8	B	58	65	Right-handed alpha
Helix 9	AA9	B	66	75	Right-handed 310
Helix 10	AB1	B	99	109	Right-handed alpha
Helix 11	AB2	B	120	125	Right-handed alpha
Helix 12	AB3	B	186	195	Right-handed alpha
Helix 13	AB4	B	366	387	Right-handed alpha
Helix 14	AB5	B	403	455	Right-handed alpha
Helix 15	AB6	B	474	484	Right-handed alpha
Helix 16	AB7	C	58	65	Right-handed alpha
Helix 17	AB8	C	66	75	Right-handed 310
Helix 18	AB9	C	99	108	Right-handed alpha
Helix 19	AC1	C	120	125	Right-handed alpha
Helix 20	AC2	C	186	195	Right-handed alpha
Helix 21	AC3	C	366	387	Right-handed alpha
Helix 22	AC4	C	403	453	Right-handed alpha
Helix 23	AC5	C	474	484	Right-handed alpha
Helix 24	AC6	D	58	65	Right-handed alpha
Helix 25	AC7	D	66	75	Right-handed 310
Helix 26	AC8	D	99	108	Right-handed alpha
Helix 27	AC9	D	186	195	Right-handed alpha
Helix 28	AD1	D	366	388	Right-handed alpha
Helix 29	AD2	D	403	456	Right-handed alpha
Helix 30	AD3	D	457	459	Right-handed 310
Helix 31	AD4	D	479	484	Right-handed alpha
Helix 32	AD5	E	58	65	Right-handed alpha
Helix 33	AD6	E	66	73	Right-handed 310
Helix 34	AD7	E	99	109	Right-handed alpha
Helix 35	AD8	E	186	195	Right-handed alpha
Helix 36	AD9	E	366	387	Right-handed alpha
Helix 37	AE1	E	403	453	Right-handed alpha
Helix 38	AE2	E	474	484	Right-handed alpha
Helix 39	AE3	F	58	65	Right-handed alpha
Helix 40	AE4	F	66	73	Right-handed 310
Helix 41	AE5	F	99	108	Right-handed alpha
Helix 42	AE6	F	120	125	Right-handed alpha
Helix 43	AE7	F	186	195	Right-handed alpha
Helix 44	AE8	F	366	388	Right-handed alpha
Helix 45	AE9	F	403	453	Right-handed alpha
Helix 46	AF1	F	474	484	Right-handed alpha

There are 66 sheets in PDB entry 6D8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	351	355	anti-parallel
Strand 3	A	364	365	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	26	27	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	294	295	parallel
Strand 3	A	307	308	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	274	279	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	81	83	parallel
Strand 3	A	267	269	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	116	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	175	183	anti-parallel
Strand 4	A	250	253	anti-parallel
Strand 5	A	150	152	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	116	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	175	183	anti-parallel
Strand 4	A	228	236	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	140	first strand
Strand 2	A	143	145	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	168	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	201	204	anti-parallel
Strand 4	A	209	212	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	281	282	anti-parallel
Strand 3	A	302	303	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	365	first strand
Strand 2	B	351	357	anti-parallel
Strand 3	B	4	9	anti-parallel
Strand 4	B	466	469	anti-parallel
Strand 5	B	459	461	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	26	27	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	315	317	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	294	295	parallel
Strand 3	B	307	308	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	274	279	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	81	83	parallel
Strand 3	B	267	269	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	116	first strand
Strand 2	B	256	261	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	250	253	anti-parallel
Strand 5	B	150	152	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	116	first strand
Strand 2	B	256	261	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	228	236	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	143	145	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	201	204	anti-parallel
Strand 4	B	209	212	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	281	282	anti-parallel
Strand 3	B	302	303	anti-parallel
Strand 4	B	393	394	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	365	first strand
Strand 2	C	351	356	anti-parallel
Strand 3	C	4	9	anti-parallel
Strand 4	C	466	469	anti-parallel
Strand 5	C	459	461	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	18	first strand
Strand 2	C	26	27	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	315	317	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	294	295	parallel
Strand 3	C	307	308	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	274	279	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	81	83	parallel
Strand 3	C	267	269	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	116	first strand
Strand 2	C	256	261	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	250	253	anti-parallel
Strand 5	C	150	152	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	116	first strand
Strand 2	C	256	261	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	228	236	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	143	145	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	241	246	anti-parallel
Strand 3	C	201	205	anti-parallel
Strand 4	C	208	212	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	281	282	anti-parallel
Strand 3	C	302	303	anti-parallel
Strand 4	C	393	394	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	9	first strand
Strand 2	D	351	352	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	26	27	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	315	317	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	294	295	parallel
Strand 3	D	307	308	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	274	279	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	81	83	parallel
Strand 3	D	267	269	parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	116	first strand
Strand 2	D	256	261	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	250	253	anti-parallel
Strand 5	D	150	152	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	116	first strand
Strand 2	D	256	261	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	228	236	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	140	first strand
Strand 2	D	143	145	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	168	first strand
Strand 2	D	241	246	anti-parallel
Strand 3	D	201	204	anti-parallel
Strand 4	D	209	212	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	288	first strand
Strand 2	D	281	283	anti-parallel
Strand 3	D	302	303	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	364	365	first strand
Strand 2	E	351	356	anti-parallel
Strand 3	E	4	9	anti-parallel
Strand 4	E	466	469	anti-parallel
Strand 5	E	459	461	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	26	27	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	315	317	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	294	295	parallel
Strand 3	E	307	308	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	274	279	parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	81	83	parallel
Strand 3	E	267	269	parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	116	first strand
Strand 2	E	256	261	anti-parallel
Strand 3	E	174	183	anti-parallel
Strand 4	E	250	253	anti-parallel
Strand 5	E	150	152	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	116	first strand
Strand 2	E	256	261	anti-parallel
Strand 3	E	174	183	anti-parallel
Strand 4	E	228	236	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	140	first strand
Strand 2	E	143	145	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	168	first strand
Strand 2	E	241	246	anti-parallel
Strand 3	E	201	204	anti-parallel
Strand 4	E	209	212	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	288	first strand
Strand 2	E	281	282	anti-parallel
Strand 3	E	302	303	anti-parallel
Strand 4	E	393	394	anti-parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	365	first strand
Strand 2	F	351	356	anti-parallel
Strand 3	F	4	9	anti-parallel
Strand 4	F	466	469	anti-parallel
Strand 5	F	459	461	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	18	first strand
Strand 2	F	26	27	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	315	317	anti-parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	294	295	parallel
Strand 3	F	307	308	parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	274	279	parallel

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There are 3 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	81	83	parallel
Strand 3	F	267	269	parallel

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There are 5 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	116	first strand
Strand 2	F	256	261	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	250	253	anti-parallel
Strand 5	F	150	152	anti-parallel

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There are 4 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	116	first strand
Strand 2	F	256	261	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	228	236	anti-parallel

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There are 2 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	140	first strand
Strand 2	F	143	145	anti-parallel

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There are 4 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	168	first strand
Strand 2	F	241	246	anti-parallel
Strand 3	F	201	204	anti-parallel
Strand 4	F	209	212	anti-parallel

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There are 3 strands in AH3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	288	first strand
Strand 2	F	281	282	anti-parallel
Strand 3	F	302	303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8W