Analysis of interatomic Contacts of Structural Units in PDB entry:
6D8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D8Z entry

There are 3 chains in PDB entry 6D8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1967GLN 2273
B
 PHE 1959ASN 2272
C
 ARG 1969GLN 2273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 6D8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1967 1993Right-handed alpha
Helix 2
AA2
A
1994 2003Right-handed alpha
Helix 3
AA3
A
2005 2009Right-handed 310
Helix 4
AA4
A
2011 2017Right-handed alpha
Helix 5
AA5
A
2018 2029Right-handed alpha
Helix 6
AA6
A
2029 2036Right-handed alpha
Helix 7
AA7
A
2037 2039Right-handed 310
Helix 8
AA8
A
2040 2041Right-handed 310
Helix 9
AA9
A
2042 2051Right-handed alpha
Helix 10
AB1
A
2053 2055Right-handed 310
Helix 11
AB2
A
2056 2076Right-handed alpha
Helix 12
AB3
A
2078 2088Right-handed alpha
Helix 13
AB4
A
2092 2121Right-handed alpha
Helix 14
AB5
A
2125 2149Right-handed alpha
Helix 15
AB6
A
2158 2162Right-handed 310
Helix 16
AB7
A
2255 2271Right-handed alpha
Helix 17
AB8
B
1964 1993Right-handed alpha
Helix 18
AB9
B
1994 2002Right-handed alpha
Helix 19
AC1
B
2011 2017Right-handed alpha
Helix 20
AC2
B
2018 2029Right-handed alpha
Helix 21
AC3
B
2029 2036Right-handed alpha
Helix 22
AC4
B
2037 2039Right-handed 310
Helix 23
AC5
B
2040 2041Right-handed 310
Helix 24
AC6
B
2042 2051Right-handed alpha
Helix 25
AC7
B
2053 2055Right-handed 310
Helix 26
AC8
B
2056 2076Right-handed alpha
Helix 27
AC9
B
2078 2088Right-handed alpha
Helix 28
AD1
B
2092 2098Right-handed alpha
Helix 29
AD2
B
2098 2121Right-handed alpha
Helix 30
AD3
B
2125 2150Right-handed alpha
Helix 31
AD4
B
2158 2162Right-handed 310
Helix 32
AD5
B
2255 2271Right-handed alpha
Helix 33
AD6
C
1970 1993Right-handed alpha
Helix 34
AD7
C
1994 2003Right-handed alpha
Helix 35
AD8
C
2005 2009Right-handed 310
Helix 36
AD9
C
2011 2017Right-handed alpha
Helix 37
AE1
C
2018 2029Right-handed alpha
Helix 38
AE2
C
2029 2037Right-handed alpha
Helix 39
AE3
C
2038 2039Right-handed 310
Helix 40
AE4
C
2040 2041Right-handed 310
Helix 41
AE5
C
2042 2051Right-handed alpha
Helix 42
AE6
C
2053 2055Right-handed 310
Helix 43
AE7
C
2056 2076Right-handed alpha
Helix 44
AE8
C
2078 2088Right-handed alpha
Helix 45
AE9
C
2092 2098Right-handed alpha
Helix 46
AF1
C
2098 2121Right-handed alpha
Helix 47
AF2
C
2125 2149Right-handed alpha
Helix 48
AF3
C
2158 2162Right-handed 310
Helix 49
AF4
C
2255 2271Right-handed alpha
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There are 3 sheets in PDB entry 6D8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2151 2152first strand
Strand 2
A
2212 2219parallel
Strand 3
A
2194 2200anti-parallel
Strand 4
A
2184 2191anti-parallel
Strand 5
A
2164 2173anti-parallel
Strand 6
A
2245 2252anti-parallel
Strand 7
A
2235 2242anti-parallel
Strand 8
A
2223 2226anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2151 2152first strand
Strand 2
B
2212 2219parallel
Strand 3
B
2194 2200anti-parallel
Strand 4
B
2184 2191anti-parallel
Strand 5
B
2164 2174anti-parallel
Strand 6
B
2245 2252anti-parallel
Strand 7
B
2235 2242anti-parallel
Strand 8
B
2223 2226anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2151 2152first strand
Strand 2
C
2212 2219parallel
Strand 3
C
2194 2200anti-parallel
Strand 4
C
2184 2191anti-parallel
Strand 5
C
2164 2174anti-parallel
Strand 6
C
2245 2252anti-parallel
Strand 7
C
2235 2242anti-parallel
Strand 8
C
2223 2226anti-parallel
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