Analysis of interatomic Contacts of Structural Units in PDB entry:
6D97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D97 entry

There are 3 chains in PDB entry 6D97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 28	THR 549
B	THR 28	THR 549
C	PRO 29	VAL 280

There are 79 helices in PDB entry 6D97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	93	Right-handed alpha
Helix 2	AA2	A	106	124	Right-handed alpha
Helix 3	AA3	A	125	140	Right-handed alpha
Helix 4	AA4	A	143	160	Right-handed alpha
Helix 5	AA5	A	164	170	Right-handed alpha
Helix 6	AA6	A	204	217	Right-handed alpha
Helix 7	AA7	A	230	243	Right-handed alpha
Helix 8	AA8	A	246	250	Right-handed 310
Helix 9	AA9	A	256	268	Right-handed alpha
Helix 10	AB1	A	277	288	Right-handed alpha
Helix 11	AB2	A	310	324	Right-handed alpha
Helix 12	AB3	A	325	328	Right-handed 310
Helix 13	AB4	A	341	345	Right-handed 310
Helix 14	AB5	A	346	357	Right-handed alpha
Helix 15	AB6	A	372	385	Right-handed alpha
Helix 16	AB7	A	418	423	Right-handed alpha
Helix 17	AB8	A	426	432	Right-handed alpha
Helix 18	AB9	A	449	460	Right-handed alpha
Helix 19	AC1	A	472	482	Right-handed alpha
Helix 20	AC2	A	518	527	Right-handed alpha
Helix 21	AC3	B	81	83	Right-handed 310
Helix 22	AC4	B	84	93	Right-handed alpha
Helix 23	AC5	B	106	124	Right-handed alpha
Helix 24	AC6	B	125	140	Right-handed alpha
Helix 25	AC7	B	143	160	Right-handed alpha
Helix 26	AC8	B	164	170	Right-handed alpha
Helix 27	AC9	B	204	217	Right-handed alpha
Helix 28	AD1	B	230	243	Right-handed alpha
Helix 29	AD2	B	256	268	Right-handed alpha
Helix 30	AD3	B	277	288	Right-handed alpha
Helix 31	AD4	B	310	324	Right-handed alpha
Helix 32	AD5	B	325	328	Right-handed 310
Helix 33	AD6	B	341	345	Right-handed 310
Helix 34	AD7	B	346	357	Right-handed alpha
Helix 35	AD8	B	372	384	Right-handed alpha
Helix 36	AD9	B	418	423	Right-handed alpha
Helix 37	AE1	B	426	432	Right-handed alpha
Helix 38	AE2	B	449	460	Right-handed alpha
Helix 39	AE3	B	472	482	Right-handed alpha
Helix 40	AE4	B	518	527	Right-handed alpha
Helix 41	AE5	C	80	83	Right-handed 310
Helix 42	AE6	C	84	93	Right-handed alpha
Helix 43	AE7	C	106	124	Right-handed alpha
Helix 44	AE8	C	125	140	Right-handed alpha
Helix 45	AE9	C	143	160	Right-handed alpha
Helix 46	AF1	C	164	170	Right-handed alpha
Helix 47	AF2	C	204	217	Right-handed alpha
Helix 48	AF3	C	230	243	Right-handed alpha
Helix 49	AF4	C	256	268	Right-handed alpha
Helix 50	AF5	C	277	288	Right-handed alpha
Helix 51	AF6	C	310	324	Right-handed alpha
Helix 52	AF7	C	325	328	Right-handed 310
Helix 53	AF8	C	341	345	Right-handed 310
Helix 54	AF9	C	346	357	Right-handed alpha
Helix 55	AG1	C	372	385	Right-handed alpha
Helix 56	AG2	C	418	423	Right-handed alpha
Helix 57	AG3	C	426	432	Right-handed alpha
Helix 58	AG4	C	449	460	Right-handed alpha
Helix 59	AG5	C	472	482	Right-handed alpha
Helix 60	AG6	C	518	527	Right-handed alpha
Helix 61	AG7	D	84	93	Right-handed alpha
Helix 62	AG8	D	106	125	Right-handed alpha
Helix 63	AG9	D	125	140	Right-handed alpha
Helix 64	AH1	D	143	160	Right-handed alpha
Helix 65	AH2	D	164	170	Right-handed alpha
Helix 66	AH3	D	204	217	Right-handed alpha
Helix 67	AH4	D	230	243	Right-handed alpha
Helix 68	AH5	D	256	268	Right-handed alpha
Helix 69	AH6	D	277	288	Right-handed alpha
Helix 70	AH7	D	310	324	Right-handed alpha
Helix 71	AH8	D	325	328	Right-handed 310
Helix 72	AH9	D	341	345	Right-handed 310
Helix 73	AI1	D	346	357	Right-handed alpha
Helix 74	AI2	D	372	385	Right-handed alpha
Helix 75	AI3	D	418	423	Right-handed alpha
Helix 76	AI4	D	426	432	Right-handed alpha
Helix 77	AI5	D	449	460	Right-handed alpha
Helix 78	AI6	D	472	482	Right-handed alpha
Helix 79	AI7	D	518	527	Right-handed alpha

There are 16 sheets in PDB entry 6D97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	72	76	parallel
Strand 3	A	62	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	54	56	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	182	189	anti-parallel
Strand 3	A	528	535	anti-parallel
Strand 4	B	487	490	parallel
Strand 5	B	465	469	parallel
Strand 6	B	300	304	parallel
Strand 7	B	333	339	parallel
Strand 8	B	439	445	parallel
Strand 9	B	413	416	parallel
Strand 10	B	390	393	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	220	225	parallel
Strand 3	A	193	198	parallel
Strand 4	A	271	275	parallel
Strand 5	A	292	295	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	393	first strand
Strand 2	A	413	416	anti-parallel
Strand 3	A	439	445	parallel
Strand 4	A	333	339	parallel
Strand 5	A	300	304	parallel
Strand 6	A	465	469	parallel
Strand 7	A	487	490	parallel
Strand 8	B	528	535	parallel
Strand 9	B	182	189	anti-parallel
Strand 10	B	173	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	72	77	parallel
Strand 3	B	61	65	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	54	55	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	220	225	parallel
Strand 3	B	193	198	parallel
Strand 4	B	271	275	parallel
Strand 5	B	293	295	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	72	77	parallel
Strand 3	C	61	65	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	54	55	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	182	189	anti-parallel
Strand 3	C	528	535	anti-parallel
Strand 4	D	487	490	parallel
Strand 5	D	465	469	parallel
Strand 6	D	300	304	parallel
Strand 7	D	333	339	parallel
Strand 8	D	439	445	parallel
Strand 9	D	413	416	parallel
Strand 10	D	390	393	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	253	first strand
Strand 2	C	220	225	parallel
Strand 3	C	193	198	parallel
Strand 4	C	271	275	parallel
Strand 5	C	292	295	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	393	first strand
Strand 2	C	413	416	anti-parallel
Strand 3	C	439	445	parallel
Strand 4	C	333	339	parallel
Strand 5	C	300	304	parallel
Strand 6	C	465	469	parallel
Strand 7	C	487	490	parallel
Strand 8	D	528	535	parallel
Strand 9	D	182	189	anti-parallel
Strand 10	D	173	176	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	72	77	parallel
Strand 3	D	61	65	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	54	55	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	220	225	parallel
Strand 3	D	193	198	parallel
Strand 4	D	271	275	parallel
Strand 5	D	292	295	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D97

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D97