Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D9C entry

There is 1 chain in PDB entry 6D9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6D9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
40 44Right-handed 310
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
101 109Right-handed alpha
Helix 5
AA5
A
114 127Right-handed alpha
Helix 6
AA6
A
136 146Right-handed alpha
Helix 7
AA7
A
146 154Right-handed alpha
Helix 8
AA8
A
154 163Right-handed alpha
Helix 9
AA9
A
165 169Right-handed 310
Helix 10
AB1
A
170 174Right-handed 310
Helix 11
AB2
A
198 209Right-handed alpha
Helix 12
AB3
A
220 232Right-handed alpha
Helix 13
AB4
A
242 247Right-handed alpha
Helix 14
AB5
A
293 300Right-handed 310
Helix 15
AB6
A
330 352Right-handed alpha
Helix 16
AB7
A
356 362Right-handed alpha
Helix 17
AB8
A
366 386Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6D9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
30 33parallel
Strand 3
A
6 9parallel
Strand 4
A
237 239parallel
Strand 5
A
353 355parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
192 194anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
276 279parallel
Strand 4
A
288 291anti-parallel
Strand 5
A
308 317anti-parallel
Strand 6
A
256 266anti-parallel
Strand 7
A
326 327anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il