Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D9F entry

There are 2 chains in PDB entry 6D9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5THR 325
B
 PRO 4THR 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6D9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 24Right-handed alpha
Helix 2
AA2
A
32 40Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
67 97Right-handed alpha
Helix 5
AA5
A
100 128Right-handed alpha
Helix 6
AA6
A
131 133Right-handed 310
Helix 7
AA7
A
134 150Right-handed alpha
Helix 8
AA8
A
150 163Right-handed alpha
Helix 9
AA9
A
167 178Right-handed alpha
Helix 10
AB1
A
179 195Right-handed alpha
Helix 11
AB2
A
198 230Right-handed alpha
Helix 12
AB3
A
233 250Right-handed alpha
Helix 13
AB4
A
252 270Right-handed alpha
Helix 14
AB5
A
271 275Right-handed 310
Helix 15
AB6
A
287 289Right-handed 310
Helix 16
AB7
A
290 314Right-handed alpha
Helix 17
AB8
A
316 322Right-handed alpha
Helix 18
AB9
B
16 24Right-handed alpha
Helix 19
AC1
B
32 40Right-handed alpha
Helix 20
AC2
B
60 64Right-handed 310
Helix 21
AC3
B
67 97Right-handed alpha
Helix 22
AC4
B
100 128Right-handed alpha
Helix 23
AC5
B
131 133Right-handed 310
Helix 24
AC6
B
134 150Right-handed alpha
Helix 25
AC7
B
150 164Right-handed alpha
Helix 26
AC8
B
167 178Right-handed alpha
Helix 27
AC9
B
179 198Right-handed alpha
Helix 28
AD1
B
198 230Right-handed alpha
Helix 29
AD2
B
233 250Right-handed alpha
Helix 30
AD3
B
252 270Right-handed alpha
Helix 31
AD4
B
290 314Right-handed alpha
Helix 32
AD5
B
316 322Right-handed alpha
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There are 2 sheets in PDB entry 6D9F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
284 285anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 281first strand
Strand 2
B
284 285anti-parallel
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