Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D9G entry

There are 4 chains in PDB entry 6D9G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 20	GLY 241
B	ASP 21	GLY 236
C	GLN 20	ARG 240
D	ASP 21	SER 34

There are 18 helices in PDB entry 6D9G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	51	Right-handed 310
Helix 2	AA2	A	81	84	Right-handed 310
Helix 3	AA3	A	106	110	Right-handed 310
Helix 4	AA4	A	120	124	Right-handed 310
Helix 5	AA5	A	183	185	Right-handed 310
Helix 6	AA6	A	213	215	Right-handed 310
Helix 7	AA7	A	227	230	Right-handed 310
Helix 8	AA8	B	103	107	Right-handed 310
Helix 9	AA9	B	145	151	Right-handed alpha
Helix 10	AB1	B	207	212	Right-handed alpha
Helix 11	AB2	C	47	51	Right-handed 310
Helix 12	AB3	C	106	110	Right-handed 310
Helix 13	AB4	C	120	124	Right-handed 310
Helix 14	AB5	C	183	185	Right-handed 310
Helix 15	AB6	C	227	230	Right-handed 310
Helix 16	AB7	D	103	107	Right-handed 310
Helix 17	AB8	D	145	152	Right-handed alpha
Helix 18	AB9	D	207	212	Right-handed alpha

There are 24 sheets in PDB entry 6D9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	97	102	anti-parallel
Strand 4	A	87	92	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	134	138	parallel
Strand 3	A	111	118	anti-parallel
Strand 4	A	53	58	anti-parallel
Strand 5	A	65	70	anti-parallel
Strand 6	A	77	79	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	134	138	parallel
Strand 3	A	111	118	anti-parallel
Strand 4	A	127	130	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	151	first strand
Strand 2	A	162	172	anti-parallel
Strand 3	A	201	211	anti-parallel
Strand 4	A	190	192	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	151	first strand
Strand 2	A	162	172	anti-parallel
Strand 3	A	201	211	anti-parallel
Strand 4	A	196	198	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	221	226	anti-parallel
Strand 3	A	231	236	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	39	45	anti-parallel
Strand 3	B	94	99	anti-parallel
Strand 4	B	86	91	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	126	131	parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	57	62	anti-parallel
Strand 5	B	69	73	anti-parallel
Strand 6	B	77	78	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	126	131	parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	121	122	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	54	55	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	153	163	anti-parallel
Strand 3	B	197	206	anti-parallel
Strand 4	B	183	187	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	215	221	anti-parallel
Strand 4	B	229	234	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	37	44	anti-parallel
Strand 3	C	97	102	anti-parallel
Strand 4	C	87	92	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	134	138	parallel
Strand 3	C	111	118	anti-parallel
Strand 4	C	53	58	anti-parallel
Strand 5	C	65	70	anti-parallel
Strand 6	C	77	79	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	134	138	parallel
Strand 3	C	111	118	anti-parallel
Strand 4	C	127	130	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	151	first strand
Strand 2	C	163	172	anti-parallel
Strand 3	C	201	210	anti-parallel
Strand 4	C	190	192	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	151	first strand
Strand 2	C	163	172	anti-parallel
Strand 3	C	201	210	anti-parallel
Strand 4	C	196	198	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	221	226	anti-parallel
Strand 3	C	231	236	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	39	45	anti-parallel
Strand 3	D	94	99	anti-parallel
Strand 4	D	86	91	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	126	131	parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	57	62	anti-parallel
Strand 5	D	69	73	anti-parallel
Strand 6	D	77	78	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	126	131	parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	121	122	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	54	55	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	142	first strand
Strand 2	D	153	163	anti-parallel
Strand 3	D	197	206	anti-parallel
Strand 4	D	183	187	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	169	174	anti-parallel
Strand 3	D	216	221	anti-parallel
Strand 4	D	229	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D9G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9G