Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D9M entry

There is 1 chain in PDB entry 6D9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -162THR 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6D9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-161 -151Right-handed alpha
Helix 2
AA2
A
-125 -112Right-handed alpha
Helix 3
AA3
A
-104 -82Right-handed alpha
Helix 4
AA4
A
-79 -72Right-handed alpha
Helix 5
AA5
A
-71 -56Right-handed alpha
Helix 6
AA6
A
-56 -50Right-handed alpha
Helix 7
AA7
A
-49 -40Right-handed alpha
Helix 8
AA8
A
-38 -29Right-handed alpha
Helix 9
AA9
A
-27 -21Right-handed alpha
Helix 10
AB1
A
-21 -7Right-handed alpha
Helix 11
AB2
A
-5 0Right-handed alpha
Helix 12
AB3
A
10 29Right-handed alpha
Helix 13
AB4
A
41 50Right-handed alpha
Helix 14
AB5
A
50 68Right-handed alpha
Helix 15
AB6
A
91 109Right-handed alpha
Helix 16
AB7
A
136 154Right-handed alpha
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There are 2 sheets in PDB entry 6D9M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-149 -144first strand
Strand 2
A
-138 -135anti-parallel
Strand 3
A
-132 -129anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
32 39anti-parallel
Strand 4
A
123 130anti-parallel
Strand 5
A
158 161parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il