Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D9R entry

There are 2 chains in PDB entry 6D9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0SER 179
B
 ALA 0SER 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6D9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 4Right-handed 310
Helix 2
AA2
A
12 31Right-handed alpha
Helix 3
AA3
A
45 55Right-handed alpha
Helix 4
AA4
A
105 118Right-handed alpha
Helix 5
AA5
A
132 135Right-handed 310
Helix 6
AA6
A
174 179Right-handed alpha
Helix 7
AA7
B
1 4Right-handed 310
Helix 8
AA8
B
12 31Right-handed alpha
Helix 9
AA9
B
45 55Right-handed alpha
Helix 10
AB1
B
105 118Right-handed alpha
Helix 11
AB2
B
132 135Right-handed 310
Helix 12
AB3
B
175 179Right-handed 310
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There are 4 sheets in PDB entry 6D9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
153 154anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
37 42parallel
Strand 4
A
94 102parallel
Strand 5
A
122 130parallel
Strand 6
A
143 147parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
170 173anti-parallel
Strand 3
B
153 154anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
37 42parallel
Strand 4
B
94 102parallel
Strand 5
B
122 130parallel
Strand 6
B
143 147parallel
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