Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D9T entry

There is 1 chain in PDB entry 6D9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -2GLU 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6D9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 28Right-handed alpha
Helix 2
AA2
A
67 84Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
119 128Right-handed alpha
Helix 5
AA5
A
131 142Right-handed alpha
Helix 6
AA6
A
149 161Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
187 191Right-handed 310
Helix 9
AA9
A
206 209Right-handed 310
Helix 10
AB1
A
210 225Right-handed alpha
Helix 11
AB2
A
237 248Right-handed alpha
Helix 12
AB3
A
250 252Right-handed 310
Helix 13
AB4
A
262 268Right-handed alpha
Helix 14
AB5
A
283 293Right-handed alpha
Helix 15
AB6
A
303 308Right-handed alpha
Helix 16
AB7
A
321 335Right-handed alpha
Helix 17
AB8
A
335 355Right-handed alpha
Helix 18
AB9
A
355 372Right-handed alpha
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There are 2 sheets in PDB entry 6D9T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
31 37parallel
Strand 3
A
2 6parallel
Strand 4
A
87 91parallel
Strand 5
A
112 117parallel
Strand 6
A
144 147parallel
Strand 7
A
166 168parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
227 232parallel
Strand 3
A
197 202parallel
Strand 4
A
272 275parallel
Strand 5
A
295 299parallel
Strand 6
A
315 317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il