Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D9W entry

There are 3 chains in PDB entry 6D9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 43	GLY 436
H	GLN 1	PRO 213
L	ASP 1	GLU 213

There are 26 helices in PDB entry 6D9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	55	Right-handed alpha
Helix 2	AA2	A	56	70	Right-handed alpha
Helix 3	AA3	A	71	73	Right-handed 310
Helix 4	AA4	A	74	100	Right-handed alpha
Helix 5	AA5	A	102	107	Right-handed alpha
Helix 6	AA6	A	112	146	Right-handed alpha
Helix 7	AA7	A	149	165	Right-handed alpha
Helix 8	AA8	A	171	194	Right-handed alpha
Helix 9	AA9	A	199	209	Right-handed alpha
Helix 10	AB1	A	213	229	Right-handed alpha
Helix 11	AB2	A	230	236	Right-handed alpha
Helix 12	AB3	A	257	286	Right-handed alpha
Helix 13	AB4	A	296	304	Right-handed alpha
Helix 14	AB5	A	308	340	Right-handed alpha
Helix 15	AB6	A	352	356	Right-handed alpha
Helix 16	AB7	A	357	366	Right-handed alpha
Helix 17	AB8	A	369	385	Right-handed alpha
Helix 18	AB9	A	385	397	Right-handed alpha
Helix 19	AC1	A	408	436	Right-handed alpha
Helix 20	AC2	H	28	32	Right-handed 310
Helix 21	AC3	H	86	90	Right-handed 310
Helix 22	AC4	H	187	189	Right-handed 310
Helix 23	AC5	H	201	204	Right-handed 310
Helix 24	AC6	L	79	83	Right-handed 310
Helix 25	AC7	L	121	126	Right-handed alpha
Helix 26	AC8	L	182	188	Right-handed alpha

There are 10 sheets in PDB entry 6D9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	83	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	108	112	parallel
Strand 3	H	91	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	136	146	anti-parallel
Strand 3	H	175	185	anti-parallel
Strand 4	H	165	166	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	136	146	anti-parallel
Strand 3	H	175	185	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	157	first strand
Strand 2	H	194	200	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	117	first strand
Strand 2	L	134	139	anti-parallel
Strand 3	L	173	179	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	201	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9W