Analysis of interatomic Contacts of Structural Units in PDB entry:
6DA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DA0 entry

There is 1 chain in PDB entry 6DA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 23LEU 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6DA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 42Right-handed alpha
Helix 2
AA2
A
85 105Right-handed alpha
Helix 3
AA3
A
130 133Right-handed 310
Helix 4
AA4
A
139 141Right-handed 310
Helix 5
AA5
A
156 170Right-handed alpha
Helix 6
AA6
A
172 176Right-handed alpha
Helix 7
AA7
A
228 232Right-handed 310
Helix 8
AA8
A
243 260Right-handed alpha
Helix 9
AA9
A
266 270Right-handed 310
Helix 10
AB1
A
272 284Right-handed alpha
Helix 11
AB2
A
294 302Right-handed alpha
Helix 12
AB3
A
305 330Right-handed alpha
Helix 13
AB4
A
340 346Right-handed alpha
Helix 14
AB5
A
346 353Right-handed alpha
Helix 15
AB6
A
353 364Right-handed alpha
Helix 16
AB7
A
367 371Right-handed 310
Helix 17
AB8
A
384 399Right-handed alpha
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There are 3 sheets in PDB entry 6DA0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 82first strand
Strand 2
A
59 68anti-parallel
Strand 3
A
47 55anti-parallel
Strand 4
A
110 115parallel
Strand 5
A
151 155parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
123 125anti-parallel
Strand 3
A
135 137anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
333 339parallel
Strand 4
A
199 205parallel
Strand 5
A
209 217anti-parallel
Strand 6
A
221 227anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il