Analysis of interatomic Contacts of Structural Units in PDB entry:
6DA1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DA1 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 6DA1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 302ASP 438
B
 LYS 301ASP 438
C
 PRO 281PRO 281
C
 ASP 284ASP 284
C
 ASP 287ASP 287
C
 GLU 289ASP 290
C
 PRO 292TRP 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6DA1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
303 314Right-handed alpha
Helix 2
AA2
A
322 331Right-handed alpha
Helix 3
AA3
A
336 346Right-handed alpha
Helix 4
AA4
A
347 351Right-handed 310
Helix 5
AA5
A
367 379Right-handed alpha
Helix 6
AA6
A
385 399Right-handed alpha
Helix 7
AA7
A
417 423Right-handed alpha
Helix 8
AA8
A
425 434Right-handed alpha
Helix 9
AA9
B
303 314Right-handed alpha
Helix 10
AB1
B
322 331Right-handed alpha
Helix 11
AB2
B
336 346Right-handed alpha
Helix 12
AB3
B
347 351Right-handed 310
Helix 13
AB4
B
367 380Right-handed alpha
Helix 14
AB5
B
385 399Right-handed alpha
Helix 15
AB6
B
417 423Right-handed alpha
Helix 16
AB7
B
425 434Right-handed alpha
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There are 2 sheets in PDB entry 6DA1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
362 364anti-parallel
Strand 3
A
411 414anti-parallel
Strand 4
A
402 404anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 356first strand
Strand 2
B
362 364anti-parallel
Strand 3
B
411 414anti-parallel
Strand 4
B
402 404anti-parallel
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