Analysis of interatomic Contacts of Structural Units in PDB entry:
6DA6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DA6 entry

There are 3 chains in PDB entry 6DA6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ALA 485
B	SER 0	ALA 485
C	SER 0	ASP 400

There are 81 helices in PDB entry 6DA6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	17	Right-handed alpha
Helix 2	AA2	A	31	43	Right-handed alpha
Helix 3	AA3	A	77	84	Right-handed alpha
Helix 4	AA4	A	91	103	Right-handed alpha
Helix 5	AA5	A	116	120	Right-handed 310
Helix 6	AA6	A	126	128	Right-handed 310
Helix 7	AA7	A	129	133	Right-handed 310
Helix 8	AA8	A	186	198	Right-handed alpha
Helix 9	AA9	A	213	220	Right-handed alpha
Helix 10	AB1	A	227	237	Right-handed alpha
Helix 11	AB2	A	315	320	Right-handed alpha
Helix 12	AB3	A	320	336	Right-handed alpha
Helix 13	AB4	A	346	350	Right-handed 310
Helix 14	AB5	A	361	366	Right-handed alpha
Helix 15	AB6	A	370	384	Right-handed alpha
Helix 16	AB7	A	385	391	Right-handed 310
Helix 17	AB8	A	405	417	Right-handed alpha
Helix 18	AB9	A	438	445	Right-handed alpha
Helix 19	AC1	A	467	472	Right-handed alpha
Helix 20	AC2	A	473	485	Right-handed alpha
Helix 21	AC3	B	6	17	Right-handed alpha
Helix 22	AC4	B	31	43	Right-handed alpha
Helix 23	AC5	B	77	84	Right-handed alpha
Helix 24	AC6	B	91	103	Right-handed alpha
Helix 25	AC7	B	116	120	Right-handed 310
Helix 26	AC8	B	126	128	Right-handed 310
Helix 27	AC9	B	129	133	Right-handed 310
Helix 28	AD1	B	186	198	Right-handed alpha
Helix 29	AD2	B	213	220	Right-handed alpha
Helix 30	AD3	B	227	237	Right-handed alpha
Helix 31	AD4	B	315	320	Right-handed alpha
Helix 32	AD5	B	320	336	Right-handed alpha
Helix 33	AD6	B	346	350	Right-handed 310
Helix 34	AD7	B	361	366	Right-handed alpha
Helix 35	AD8	B	370	384	Right-handed alpha
Helix 36	AD9	B	385	391	Right-handed 310
Helix 37	AE1	B	405	417	Right-handed alpha
Helix 38	AE2	B	438	445	Right-handed alpha
Helix 39	AE3	B	467	472	Right-handed alpha
Helix 40	AE4	B	473	485	Right-handed alpha
Helix 41	AE5	C	6	17	Right-handed alpha
Helix 42	AE6	C	31	43	Right-handed alpha
Helix 43	AE7	C	77	84	Right-handed alpha
Helix 44	AE8	C	91	103	Right-handed alpha
Helix 45	AE9	C	116	120	Right-handed 310
Helix 46	AF1	C	126	128	Right-handed 310
Helix 47	AF2	C	129	133	Right-handed 310
Helix 48	AF3	C	186	198	Right-handed alpha
Helix 49	AF4	C	213	220	Right-handed alpha
Helix 50	AF5	C	227	237	Right-handed alpha
Helix 51	AF6	C	315	320	Right-handed alpha
Helix 52	AF7	C	320	336	Right-handed alpha
Helix 53	AF8	C	346	350	Right-handed 310
Helix 54	AF9	C	361	366	Right-handed alpha
Helix 55	AG1	C	370	384	Right-handed alpha
Helix 56	AG2	C	385	391	Right-handed 310
Helix 57	AG3	C	405	417	Right-handed alpha
Helix 58	AG4	C	438	445	Right-handed alpha
Helix 59	AG5	C	458	462	Right-handed 310
Helix 60	AG6	C	467	472	Right-handed alpha
Helix 61	AG7	C	473	485	Right-handed alpha
Helix 62	AG8	D	6	17	Right-handed alpha
Helix 63	AG9	D	31	44	Right-handed alpha
Helix 64	AH1	D	77	84	Right-handed alpha
Helix 65	AH2	D	91	103	Right-handed alpha
Helix 66	AH3	D	116	120	Right-handed 310
Helix 67	AH4	D	126	128	Right-handed 310
Helix 68	AH5	D	129	133	Right-handed 310
Helix 69	AH6	D	186	198	Right-handed alpha
Helix 70	AH7	D	213	220	Right-handed alpha
Helix 71	AH8	D	227	237	Right-handed alpha
Helix 72	AH9	D	315	320	Right-handed alpha
Helix 73	AI1	D	320	336	Right-handed alpha
Helix 74	AI2	D	346	350	Right-handed 310
Helix 75	AI3	D	361	366	Right-handed alpha
Helix 76	AI4	D	370	384	Right-handed alpha
Helix 77	AI5	D	385	391	Right-handed 310
Helix 78	AI6	D	405	417	Right-handed alpha
Helix 79	AI7	D	438	445	Right-handed alpha
Helix 80	AI8	D	467	472	Right-handed alpha
Helix 81	AI9	D	473	485	Right-handed alpha

There are 20 sheets in PDB entry 6DA6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	47	50	parallel
Strand 3	A	61	64	anti-parallel
Strand 4	A	304	306	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	241	244	parallel
Strand 3	A	251	253	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	291	299	anti-parallel
Strand 3	A	177	180	anti-parallel
Strand 4	A	170	172	anti-parallel
Strand 5	A	146	148	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	291	299	anti-parallel
Strand 3	A	258	265	anti-parallel
Strand 4	A	202	208	anti-parallel
Strand 5	A	152	156	anti-parallel
Strand 6	A	163	166	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	353	358	anti-parallel
Strand 3	A	393	398	parallel
Strand 4	A	447	453	parallel
Strand 5	A	423	428	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	47	50	parallel
Strand 3	B	61	64	anti-parallel
Strand 4	B	304	306	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	241	244	parallel
Strand 3	B	251	253	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	177	180	anti-parallel
Strand 4	B	170	172	anti-parallel
Strand 5	B	146	148	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	258	265	anti-parallel
Strand 4	B	202	208	anti-parallel
Strand 5	B	152	156	anti-parallel
Strand 6	B	163	166	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	353	358	anti-parallel
Strand 3	B	393	398	parallel
Strand 4	B	447	453	parallel
Strand 5	B	423	428	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	47	50	parallel
Strand 3	C	61	64	anti-parallel
Strand 4	C	304	306	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	C	241	244	parallel
Strand 3	C	251	253	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	124	first strand
Strand 2	C	291	299	anti-parallel
Strand 3	C	177	179	anti-parallel
Strand 4	C	170	172	anti-parallel
Strand 5	C	146	148	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	124	first strand
Strand 2	C	291	299	anti-parallel
Strand 3	C	258	265	anti-parallel
Strand 4	C	202	208	anti-parallel
Strand 5	C	152	156	anti-parallel
Strand 6	C	163	166	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	344	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	393	398	parallel
Strand 4	C	447	453	parallel
Strand 5	C	423	428	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	47	50	parallel
Strand 3	D	61	64	anti-parallel
Strand 4	D	304	306	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	112	first strand
Strand 2	D	241	244	parallel
Strand 3	D	251	253	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	124	first strand
Strand 2	D	291	299	anti-parallel
Strand 3	D	177	180	anti-parallel
Strand 4	D	170	172	anti-parallel
Strand 5	D	146	148	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	124	first strand
Strand 2	D	291	299	anti-parallel
Strand 3	D	258	264	anti-parallel
Strand 4	D	202	208	anti-parallel
Strand 5	D	152	156	anti-parallel
Strand 6	D	163	166	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	344	first strand
Strand 2	D	353	358	anti-parallel
Strand 3	D	393	398	parallel
Strand 4	D	447	453	parallel
Strand 5	D	423	428	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DA6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DA6