Analysis of interatomic Contacts of Structural Units in PDB entry:
6DA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DA9 entry

There is 1 chain in PDB entry 6DA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ALA 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6DA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
77 84Right-handed alpha
Helix 4
AA4
A
91 103Right-handed alpha
Helix 5
AA5
A
116 120Right-handed 310
Helix 6
AA6
A
126 128Right-handed 310
Helix 7
AA7
A
129 133Right-handed 310
Helix 8
AA8
A
186 198Right-handed alpha
Helix 9
AA9
A
212 219Right-handed alpha
Helix 10
AB1
A
227 237Right-handed alpha
Helix 11
AB2
A
315 320Right-handed alpha
Helix 12
AB3
A
320 336Right-handed alpha
Helix 13
AB4
A
346 350Right-handed 310
Helix 14
AB5
A
361 366Right-handed alpha
Helix 15
AB6
A
370 384Right-handed alpha
Helix 16
AB7
A
387 391Right-handed 310
Helix 17
AB8
A
405 417Right-handed alpha
Helix 18
AB9
A
438 445Right-handed alpha
Helix 19
AC1
A
460 465Right-handed alpha
Helix 20
AC2
A
467 472Right-handed alpha
Helix 21
AC3
A
473 485Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6DA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
47 50parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
304 307parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
241 244parallel
Strand 3
A
251 253anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
291 299anti-parallel
Strand 3
A
177 179anti-parallel
Strand 4
A
170 172anti-parallel
Strand 5
A
146 148anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
291 299anti-parallel
Strand 3
A
258 265anti-parallel
Strand 4
A
202 208anti-parallel
Strand 5
A
152 156anti-parallel
Strand 6
A
163 166anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 344first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
393 398parallel
Strand 4
A
447 453parallel
Strand 5
A
423 428anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il