Analysis of interatomic Contacts of Structural Units in PDB entry:
6DAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DAE entry

There are 4 chains in PDB entry 6DAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2THR 146
B
 GLN 3THR 146
D
 GLU 1612LYS 1635
C
 GLU 1612ARG 1634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6DAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 20Right-handed alpha
Helix 2
AA2
A
28 39Right-handed alpha
Helix 3
AA3
A
44 56Right-handed alpha
Helix 4
AA4
A
65 79Right-handed alpha
Helix 5
AA5
A
80 93Right-handed alpha
Helix 6
AA6
A
102 113Right-handed alpha
Helix 7
AA7
A
117 129Right-handed alpha
Helix 8
AA8
A
138 146Right-handed alpha
Helix 9
AA9
B
5 20Right-handed alpha
Helix 10
AB1
B
28 39Right-handed alpha
Helix 11
AB2
B
44 56Right-handed alpha
Helix 12
AB3
B
65 79Right-handed alpha
Helix 13
AB4
B
80 93Right-handed alpha
Helix 14
AB5
B
102 113Right-handed alpha
Helix 15
AB6
B
117 129Right-handed alpha
Helix 16
AB7
B
138 146Right-handed alpha
Helix 17
AB8
D
1613 1634Right-handed alpha
Helix 18
AB9
C
1613 1634Right-handed alpha
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There are 4 sheets in PDB entry 6DAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
63 64anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
135 137anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
63 64anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
135 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il