Analysis of interatomic Contacts of Structural Units in PDB entry:
6DAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DAQ entry

There are 8 chains in PDB entry 6DAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5ALA 179
A
 HIS 181ALA 327
B
 ASP 5ALA 179
B
 HIS 181ALA 327
C
 ASP 5ALA 179
C
 HIS 181ALA 327
D
 ASP 5ALA 179
D
 HIS 181ALA 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 6DAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
38 52Right-handed alpha
Helix 3
AA3
A
70 86Right-handed alpha
Helix 4
AA4
A
99 113Right-handed alpha
Helix 5
AA5
A
129 144Right-handed alpha
Helix 6
AA6
A
154 159Right-handed alpha
Helix 7
AA7
A
163 171Right-handed alpha
Helix 8
AA8
A
182 187Right-handed 310
Helix 9
AA9
A
188 198Right-handed alpha
Helix 10
AB1
A
206 217Right-handed alpha
Helix 11
AB2
A
228 232Right-handed 310
Helix 12
AB3
A
233 245Right-handed alpha
Helix 13
AB4
A
247 262Right-handed alpha
Helix 14
AB5
A
266 269Right-handed 310
Helix 15
AB6
A
270 276Right-handed alpha
Helix 16
AB7
A
277 290Right-handed alpha
Helix 17
AB8
A
305 327Right-handed alpha
Helix 18
AB9
B
9 13Right-handed 310
Helix 19
AC1
B
38 52Right-handed alpha
Helix 20
AC2
B
70 86Right-handed alpha
Helix 21
AC3
B
99 113Right-handed alpha
Helix 22
AC4
B
129 144Right-handed alpha
Helix 23
AC5
B
154 159Right-handed alpha
Helix 24
AC6
B
163 171Right-handed alpha
Helix 25
AC7
B
182 185Right-handed 310
Helix 26
AC8
B
186 198Right-handed alpha
Helix 27
AC9
B
209 217Right-handed alpha
Helix 28
AD1
B
228 232Right-handed 310
Helix 29
AD2
B
233 245Right-handed alpha
Helix 30
AD3
B
247 262Right-handed alpha
Helix 31
AD4
B
263 269Right-handed 310
Helix 32
AD5
B
270 277Right-handed alpha
Helix 33
AD6
B
277 290Right-handed alpha
Helix 34
AD7
B
305 327Right-handed alpha
Helix 35
AD8
C
9 13Right-handed 310
Helix 36
AD9
C
38 52Right-handed alpha
Helix 37
AE1
C
70 86Right-handed alpha
Helix 38
AE2
C
99 113Right-handed alpha
Helix 39
AE3
C
129 144Right-handed alpha
Helix 40
AE4
C
154 159Right-handed alpha
Helix 41
AE5
C
163 171Right-handed alpha
Helix 42
AE6
C
182 185Right-handed 310
Helix 43
AE7
C
186 198Right-handed alpha
Helix 44
AE8
C
206 217Right-handed alpha
Helix 45
AE9
C
228 232Right-handed 310
Helix 46
AF1
C
233 245Right-handed alpha
Helix 47
AF2
C
247 262Right-handed alpha
Helix 48
AF3
C
263 269Right-handed 310
Helix 49
AF4
C
270 277Right-handed alpha
Helix 50
AF5
C
277 290Right-handed alpha
Helix 51
AF6
C
305 327Right-handed alpha
Helix 52
AF7
D
9 13Right-handed 310
Helix 53
AF8
D
38 52Right-handed alpha
Helix 54
AF9
D
70 86Right-handed alpha
Helix 55
AG1
D
99 113Right-handed alpha
Helix 56
AG2
D
129 144Right-handed alpha
Helix 57
AG3
D
154 159Right-handed alpha
Helix 58
AG4
D
163 171Right-handed alpha
Helix 59
AG5
D
182 186Right-handed 310
Helix 60
AG6
D
188 198Right-handed alpha
Helix 61
AG7
D
209 217Right-handed alpha
Helix 62
AG8
D
228 232Right-handed 310
Helix 63
AG9
D
233 245Right-handed alpha
Helix 64
AH1
D
247 263Right-handed alpha
Helix 65
AH2
D
264 269Right-handed 310
Helix 66
AH3
D
270 276Right-handed alpha
Helix 67
AH4
D
277 290Right-handed alpha
Helix 68
AH5
D
305 327Right-handed alpha
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There are 4 sheets in PDB entry 6DAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
176 180parallel
Strand 3
A
148 152parallel
Strand 4
A
117 120parallel
Strand 5
A
91 94parallel
Strand 6
A
56 59parallel
Strand 7
A
15 20parallel
Strand 8
A
223 226parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
176 180parallel
Strand 3
B
148 152parallel
Strand 4
B
117 120parallel
Strand 5
B
91 94parallel
Strand 6
B
56 59parallel
Strand 7
B
15 20parallel
Strand 8
B
223 226parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 204first strand
Strand 2
C
176 180parallel
Strand 3
C
148 152parallel
Strand 4
C
117 120parallel
Strand 5
C
91 94parallel
Strand 6
C
56 59parallel
Strand 7
C
15 20parallel
Strand 8
C
223 226parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
202 204first strand
Strand 2
D
176 180parallel
Strand 3
D
148 152parallel
Strand 4
D
117 120parallel
Strand 5
D
91 94parallel
Strand 6
D
56 59parallel
Strand 7
D
15 20parallel
Strand 8
D
223 226parallel
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