Analysis of interatomic Contacts of Structural Units in PDB entry:
6DAW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DAW entry

There are 2 chains in PDB entry 6DAW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -7LEU 334
B
 VAL -6LEU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6DAW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-3 0Right-handed 310
Helix 2
AA2
A
8 27Right-handed alpha
Helix 3
AA3
A
31 37Right-handed alpha
Helix 4
AA4
A
37 43Right-handed alpha
Helix 5
AA5
A
46 60Right-handed alpha
Helix 6
AA6
A
73 78Right-handed alpha
Helix 7
AA7
A
92 105Right-handed alpha
Helix 8
AA8
A
116 120Right-handed 310
Helix 9
AA9
A
178 180Right-handed 310
Helix 10
AB1
A
183 191Right-handed alpha
Helix 11
AB2
A
200 215Right-handed alpha
Helix 12
AB3
A
218 226Right-handed alpha
Helix 13
AB4
A
245 247Right-handed 310
Helix 14
AB5
A
255 272Right-handed alpha
Helix 15
AB6
A
317 325Right-handed 310
Helix 16
AB7
B
-3 0Right-handed 310
Helix 17
AB8
B
8 27Right-handed alpha
Helix 18
AB9
B
31 37Right-handed alpha
Helix 19
AC1
B
37 43Right-handed alpha
Helix 20
AC2
B
46 60Right-handed alpha
Helix 21
AC3
B
73 78Right-handed alpha
Helix 22
AC4
B
91 106Right-handed alpha
Helix 23
AC5
B
116 120Right-handed 310
Helix 24
AC6
B
178 180Right-handed 310
Helix 25
AC7
B
183 191Right-handed alpha
Helix 26
AC8
B
200 214Right-handed alpha
Helix 27
AC9
B
218 226Right-handed alpha
Helix 28
AD1
B
245 247Right-handed 310
Helix 29
AD2
B
255 272Right-handed alpha
Helix 30
AD3
B
317 325Right-handed 310
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There are 10 sheets in PDB entry 6DAW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
64 68parallel
Strand 3
A
283 287anti-parallel
Strand 4
A
158 165anti-parallel
Strand 5
A
308 315anti-parallel
Strand 6
A
123 125anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
64 68parallel
Strand 3
A
283 287anti-parallel
Strand 4
A
158 165anti-parallel
Strand 5
A
308 315anti-parallel
Strand 6
A
109 113anti-parallel
Strand 7
A
332 333parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
291 295anti-parallel
Strand 3
A
171 176anti-parallel
Strand 4
A
274 277anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
249 251anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
241 242anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
64 68parallel
Strand 3
B
283 287anti-parallel
Strand 4
B
158 165anti-parallel
Strand 5
B
308 315anti-parallel
Strand 6
B
123 125anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
64 68parallel
Strand 3
B
283 287anti-parallel
Strand 4
B
158 165anti-parallel
Strand 5
B
308 315anti-parallel
Strand 6
B
109 113anti-parallel
Strand 7
B
332 333parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
291 295anti-parallel
Strand 3
B
171 176anti-parallel
Strand 4
B
274 277anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
249 251anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
241 242anti-parallel
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