Analysis of interatomic Contacts of Structural Units in PDB entry:
6DAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DAY entry

There are 4 chains in PDB entry 6DAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5PRO 282
B
 SER 5PRO 282
C
 ASP 3PRO 282
D
 THR 4PRO 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6DAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 55Right-handed alpha
Helix 2
AA2
A
75 94Right-handed alpha
Helix 3
AA3
A
104 115Right-handed alpha
Helix 4
AA4
A
129 138Right-handed alpha
Helix 5
AA5
A
161 180Right-handed alpha
Helix 6
AA6
A
183 185Right-handed 310
Helix 7
AA7
A
198 208Right-handed alpha
Helix 8
AA8
A
208 213Right-handed alpha
Helix 9
AA9
A
226 234Right-handed alpha
Helix 10
AB1
A
237 240Right-handed 310
Helix 11
AB2
A
241 255Right-handed alpha
Helix 12
AB3
A
264 280Right-handed alpha
Helix 13
AB4
B
29 33Right-handed 310
Helix 14
AB5
B
40 55Right-handed alpha
Helix 15
AB6
B
75 94Right-handed alpha
Helix 16
AB7
B
104 115Right-handed alpha
Helix 17
AB8
B
129 138Right-handed alpha
Helix 18
AB9
B
161 178Right-handed alpha
Helix 19
AC1
B
183 185Right-handed 310
Helix 20
AC2
B
198 208Right-handed alpha
Helix 21
AC3
B
208 213Right-handed alpha
Helix 22
AC4
B
214 216Right-handed 310
Helix 23
AC5
B
226 234Right-handed alpha
Helix 24
AC6
B
237 240Right-handed 310
Helix 25
AC7
B
241 255Right-handed alpha
Helix 26
AC8
B
264 280Right-handed alpha
Helix 27
AC9
C
39 55Right-handed alpha
Helix 28
AD1
C
75 94Right-handed alpha
Helix 29
AD2
C
104 115Right-handed alpha
Helix 30
AD3
C
129 138Right-handed alpha
Helix 31
AD4
C
161 180Right-handed alpha
Helix 32
AD5
C
183 185Right-handed 310
Helix 33
AD6
C
198 208Right-handed alpha
Helix 34
AD7
C
208 213Right-handed alpha
Helix 35
AD8
C
226 234Right-handed alpha
Helix 36
AD9
C
237 240Right-handed 310
Helix 37
AE1
C
241 255Right-handed alpha
Helix 38
AE2
C
264 280Right-handed alpha
Helix 39
AE3
D
29 33Right-handed 310
Helix 40
AE4
D
40 55Right-handed alpha
Helix 41
AE5
D
75 94Right-handed alpha
Helix 42
AE6
D
104 115Right-handed alpha
Helix 43
AE7
D
129 138Right-handed alpha
Helix 44
AE8
D
161 180Right-handed alpha
Helix 45
AE9
D
183 185Right-handed 310
Helix 46
AF1
D
198 208Right-handed alpha
Helix 47
AF2
D
208 213Right-handed alpha
Helix 48
AF3
D
214 216Right-handed 310
Helix 49
AF4
D
226 234Right-handed alpha
Helix 50
AF5
D
237 240Right-handed 310
Helix 51
AF6
D
241 255Right-handed alpha
Helix 52
AF7
D
264 280Right-handed alpha
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There are 8 sheets in PDB entry 6DAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
141 144parallel
Strand 3
A
118 121parallel
Strand 4
A
98 101parallel
Strand 5
A
59 63parallel
Strand 6
A
21 27parallel
Strand 7
A
259 262parallel
Strand 8
A
220 221parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
13 16anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
141 144parallel
Strand 3
B
118 121parallel
Strand 4
B
98 101parallel
Strand 5
B
59 63parallel
Strand 6
B
21 27parallel
Strand 7
B
259 262parallel
Strand 8
B
220 221parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 10first strand
Strand 2
C
13 16anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 190first strand
Strand 2
C
141 144parallel
Strand 3
C
118 121parallel
Strand 4
C
98 101parallel
Strand 5
C
59 63parallel
Strand 6
C
21 27parallel
Strand 7
C
259 262parallel
Strand 8
C
220 221parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 10first strand
Strand 2
D
13 16anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 190first strand
Strand 2
D
141 144parallel
Strand 3
D
118 121parallel
Strand 4
D
98 101parallel
Strand 5
D
59 63parallel
Strand 6
D
21 27parallel
Strand 7
D
259 262parallel
Strand 8
D
220 221parallel
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