Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DBB entry

There are 3 chains in PDB entry 6DBB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	VAL 503
B	MET 1	VAL 503
C	GLN 2	GLU 327

There are 57 helices in PDB entry 6DBB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	10	Right-handed alpha
Helix 2	AA2	A	13	16	Right-handed 310
Helix 3	AA3	A	40	59	Right-handed alpha
Helix 4	AA4	A	62	80	Right-handed alpha
Helix 5	AA5	A	80	93	Right-handed alpha
Helix 6	AA6	A	95	117	Right-handed alpha
Helix 7	AA7	A	154	167	Right-handed alpha
Helix 8	AA8	A	179	201	Right-handed alpha
Helix 9	AA9	A	216	226	Right-handed alpha
Helix 10	AB1	A	237	251	Right-handed alpha
Helix 11	AB2	A	272	286	Right-handed alpha
Helix 12	AB3	A	287	290	Right-handed 310
Helix 13	AB4	A	304	319	Right-handed alpha
Helix 14	AB5	A	336	353	Right-handed alpha
Helix 15	AB6	A	384	389	Right-handed alpha
Helix 16	AB7	A	403	413	Right-handed alpha
Helix 17	AB8	A	426	435	Right-handed alpha
Helix 18	AB9	A	462	466	Right-handed 310
Helix 19	AC1	A	474	478	Right-handed 310
Helix 20	AC2	B	2	10	Right-handed alpha
Helix 21	AC3	B	13	16	Right-handed 310
Helix 22	AC4	B	40	59	Right-handed alpha
Helix 23	AC5	B	62	80	Right-handed alpha
Helix 24	AC6	B	80	93	Right-handed alpha
Helix 25	AC7	B	95	117	Right-handed alpha
Helix 26	AC8	B	154	167	Right-handed alpha
Helix 27	AC9	B	179	201	Right-handed alpha
Helix 28	AD1	B	216	226	Right-handed alpha
Helix 29	AD2	B	237	251	Right-handed alpha
Helix 30	AD3	B	272	286	Right-handed alpha
Helix 31	AD4	B	287	290	Right-handed 310
Helix 32	AD5	B	304	319	Right-handed alpha
Helix 33	AD6	B	336	353	Right-handed alpha
Helix 34	AD7	B	384	389	Right-handed alpha
Helix 35	AD8	B	403	413	Right-handed alpha
Helix 36	AD9	B	426	435	Right-handed alpha
Helix 37	AE1	B	462	466	Right-handed 310
Helix 38	AE2	B	474	478	Right-handed 310
Helix 39	AE3	C	3	10	Right-handed alpha
Helix 40	AE4	C	13	16	Right-handed 310
Helix 41	AE5	C	40	59	Right-handed alpha
Helix 42	AE6	C	62	80	Right-handed alpha
Helix 43	AE7	C	80	93	Right-handed alpha
Helix 44	AE8	C	95	117	Right-handed alpha
Helix 45	AE9	C	154	167	Right-handed alpha
Helix 46	AF1	C	179	201	Right-handed alpha
Helix 47	AF2	C	216	226	Right-handed alpha
Helix 48	AF3	C	237	251	Right-handed alpha
Helix 49	AF4	C	272	286	Right-handed alpha
Helix 50	AF5	C	287	290	Right-handed 310
Helix 51	AF6	C	304	319	Right-handed alpha
Helix 52	AF7	C	336	353	Right-handed alpha
Helix 53	AF8	C	384	389	Right-handed alpha
Helix 54	AF9	C	403	413	Right-handed alpha
Helix 55	AG1	C	426	435	Right-handed alpha
Helix 56	AG2	C	462	466	Right-handed 310
Helix 57	AG3	C	474	478	Right-handed 310

There are 18 sheets in PDB entry 6DBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	25	first strand
Strand 2	A	32	36	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	132	140	anti-parallel
Strand 3	A	480	488	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	171	174	parallel
Strand 3	A	144	147	parallel
Strand 4	A	231	235	parallel
Strand 5	A	254	258	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	359	first strand
Strand 2	A	376	379	anti-parallel
Strand 3	A	395	401	parallel
Strand 4	A	295	301	parallel
Strand 5	A	263	267	parallel
Strand 6	A	419	423	parallel
Strand 7	A	443	446	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	372	373	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	470	471	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	25	first strand
Strand 2	B	32	36	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	132	140	anti-parallel
Strand 3	B	480	488	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	171	174	parallel
Strand 3	B	144	147	parallel
Strand 4	B	231	235	parallel
Strand 5	B	254	258	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	376	379	anti-parallel
Strand 3	B	395	401	parallel
Strand 4	B	295	301	parallel
Strand 5	B	263	267	parallel
Strand 6	B	419	423	parallel
Strand 7	B	443	446	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	372	373	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	470	471	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	25	first strand
Strand 2	C	32	36	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	132	140	anti-parallel
Strand 3	C	480	488	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	212	first strand
Strand 2	C	171	174	parallel
Strand 3	C	144	147	parallel
Strand 4	C	231	235	parallel
Strand 5	C	254	258	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	376	379	anti-parallel
Strand 3	C	395	401	parallel
Strand 4	C	295	301	parallel
Strand 5	C	263	267	parallel
Strand 6	C	419	423	parallel
Strand 7	C	443	446	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	372	373	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	459	first strand
Strand 2	C	470	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DBB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBB