Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DBF entry

There are 2 chains in PDB entry 6DBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 37LEU 244
B
 GLN 1SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6DBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 49Right-handed alpha
Helix 2
AA2
A
51 62Right-handed alpha
Helix 3
AA3
A
72 78Right-handed alpha
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
136 140Right-handed 310
Helix 7
AA7
A
158 164Right-handed 310
Helix 8
AA8
A
180 186Right-handed 310
Helix 9
AA9
A
202 206Right-handed 310
Helix 10
AB1
A
224 228Right-handed 310
Helix 11
AB2
B
62 65Right-handed 310
Helix 12
AB3
B
74 76Right-handed 310
Helix 13
AB4
B
87 91Right-handed 310
Helix 14
AB5
B
101 106Right-handed alpha
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There are 5 sheets in PDB entry 6DBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
70 71anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
103 105parallel
Strand 3
A
125 127parallel
Strand 4
A
147 149parallel
Strand 5
A
169 171parallel
Strand 6
A
191 193parallel
Strand 7
A
213 215parallel
Strand 8
A
235 237parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
117 122parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
46 53anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
117 122parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
112 113anti-parallel
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