Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DBG entry

There are 3 chains in PDB entry 6DBG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 36	GLU 321
B	GLU 36	GLU 321
C	VAL 2	VAL 79

There are 26 helices in PDB entry 6DBG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	48	Right-handed alpha
Helix 2	AA2	A	50	62	Right-handed alpha
Helix 3	AA3	A	71	77	Right-handed alpha
Helix 4	AA4	A	93	97	Right-handed 310
Helix 5	AA5	A	113	117	Right-handed 310
Helix 6	AA6	A	134	139	Right-handed 310
Helix 7	AA7	A	157	163	Right-handed 310
Helix 8	AA8	A	179	185	Right-handed 310
Helix 9	AA9	A	201	205	Right-handed 310
Helix 10	AB1	A	223	227	Right-handed 310
Helix 11	AB2	B	44	48	Right-handed alpha
Helix 12	AB3	B	50	61	Right-handed alpha
Helix 13	AB4	B	71	77	Right-handed alpha
Helix 14	AB5	B	93	97	Right-handed 310
Helix 15	AB6	B	113	117	Right-handed 310
Helix 16	AB7	B	134	139	Right-handed 310
Helix 17	AB8	B	157	163	Right-handed 310
Helix 18	AB9	B	179	185	Right-handed 310
Helix 19	AC1	B	201	205	Right-handed 310
Helix 20	AC2	B	223	227	Right-handed 310
Helix 21	AC3	C	74	76	Right-handed 310
Helix 22	AC4	C	87	91	Right-handed 310
Helix 23	AC5	C	101	106	Right-handed alpha
Helix 24	AC6	D	74	76	Right-handed 310
Helix 25	AC7	D	87	91	Right-handed 310
Helix 26	AC8	D	101	106	Right-handed alpha

There are 16 sheets in PDB entry 6DBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	69	70	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	102	104	parallel
Strand 3	A	124	126	parallel
Strand 4	A	146	148	parallel
Strand 5	A	168	170	parallel
Strand 6	A	190	192	parallel
Strand 7	A	212	214	parallel
Strand 8	A	234	236	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	307	320	parallel
Strand 3	A	247	248	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	307	320	parallel
Strand 3	A	293	304	anti-parallel
Strand 4	A	271	272	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	256	first strand
Strand 2	A	282	286	anti-parallel
Strand 3	A	277	279	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	69	70	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	102	104	parallel
Strand 3	B	124	126	parallel
Strand 4	B	146	148	parallel
Strand 5	B	168	170	parallel
Strand 6	B	190	192	parallel
Strand 7	B	212	214	parallel
Strand 8	B	234	236	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	307	320	parallel
Strand 3	B	247	248	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	307	320	parallel
Strand 3	B	293	304	anti-parallel
Strand 4	B	271	272	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	256	first strand
Strand 2	B	282	286	anti-parallel
Strand 3	B	277	279	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	117	122	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	46	53	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	117	122	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	112	113	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	117	122	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	46	53	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	117	122	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	112	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DBG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBG