Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DBH entry

There are 2 chains in PDB entry 6DBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 205ASP 475
B
 GLU 207LYS 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6DBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
205 226Right-handed alpha
Helix 2
AA2
A
229 238Right-handed alpha
Helix 3
AA3
A
241 245Right-handed 310
Helix 4
AA4
A
251 259Right-handed alpha
Helix 5
AA5
A
268 272Right-handed 310
Helix 6
AA6
A
276 302Right-handed alpha
Helix 7
AA7
A
305 309Right-handed 310
Helix 8
AA8
A
310 333Right-handed alpha
Helix 9
AA9
A
350 355Right-handed alpha
Helix 10
AB1
A
360 363Right-handed 310
Helix 11
AB2
A
364 375Right-handed alpha
Helix 12
AB3
A
376 378Right-handed 310
Helix 13
AB4
A
380 393Right-handed alpha
Helix 14
AB5
A
403 425Right-handed alpha
Helix 15
AB6
A
430 438Right-handed alpha
Helix 16
AB7
A
438 460Right-handed alpha
Helix 17
AB8
A
466 473Right-handed alpha
Helix 18
AB9
B
208 226Right-handed alpha
Helix 19
AC1
B
229 239Right-handed alpha
Helix 20
AC2
B
251 260Right-handed alpha
Helix 21
AC3
B
276 301Right-handed alpha
Helix 22
AC4
B
310 333Right-handed alpha
Helix 23
AC5
B
350 355Right-handed alpha
Helix 24
AC6
B
359 363Right-handed 310
Helix 25
AC7
B
364 375Right-handed alpha
Helix 26
AC8
B
376 378Right-handed 310
Helix 27
AC9
B
380 393Right-handed alpha
Helix 28
AD1
B
403 425Right-handed alpha
Helix 29
AD2
B
430 460Right-handed alpha
Helix 30
AD3
B
466 473Right-handed alpha
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There are 2 sheets in PDB entry 6DBH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
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