Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DBM entry

There are 2 chains in PDB entry 6DBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 889GLU 1053
A
 TYR 1055GLY 1178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6DBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
940 954Right-handed alpha
Helix 2
AA2
A
969 972Right-handed 310
Helix 3
AA3
A
985 990Right-handed alpha
Helix 4
AA4
A
996 1017Right-handed alpha
Helix 5
AA5
A
1025 1027Right-handed 310
Helix 6
AA6
A
1064 1068Right-handed 310
Helix 7
AA7
A
1069 1076Right-handed alpha
Helix 8
AA8
A
1080 1096Right-handed alpha
Helix 9
AA9
A
1099 1102Right-handed 310
Helix 10
AB1
A
1103 1113Right-handed alpha
Helix 11
AB2
A
1116 1118Right-handed 310
Helix 12
AB3
A
1119 1129Right-handed alpha
Helix 13
AB4
A
1141 1152Right-handed alpha
Helix 14
AB5
A
1155 1159Right-handed 310
Helix 15
AB6
A
1161 1177Right-handed alpha
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There are 4 sheets in PDB entry 6DBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
891 892first strand
Strand 2
A
962 968parallel
Strand 3
A
973 979anti-parallel
Strand 4
A
927 932anti-parallel
Strand 5
A
909 915anti-parallel
Strand 6
A
898 906anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1019 1020first strand
Strand 2
A
1046 1047anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1029 1033first strand
Strand 2
A
1036 1039anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1055first strand
Strand 2
A
1078 1079anti-parallel
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