Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DBS entry

There are 3 chains in PDB entry 6DBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 23HIS 588
C
GLU 23HIS 588
B
GLU 23GLY 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6DBS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
168 178Right-handed alpha
Helix 2
AA2
A
191 194Right-handed 310
Helix 3
AA3
A
195 200Right-handed alpha
Helix 4
AA4
A
346 351Right-handed 310
Helix 5
AA5
A
355 359Right-handed 310
Helix 6
AA6
A
372 378Right-handed alpha
Helix 7
AA7
A
381 385Right-handed 310
Helix 8
AA8
A
394 408Right-handed alpha
Helix 9
AA9
A
415 419Right-handed 310
Helix 10
AB1
A
424 428Right-handed 310
Helix 11
AB2
A
476 480Right-handed 310
Helix 12
AB3
C
168 178Right-handed alpha
Helix 13
AB4
C
191 194Right-handed 310
Helix 14
AB5
C
195 200Right-handed alpha
Helix 15
AB6
C
346 351Right-handed 310
Helix 16
AB7
C
355 359Right-handed 310
Helix 17
AB8
C
372 378Right-handed alpha
Helix 18
AB9
C
381 385Right-handed 310
Helix 19
AC1
C
394 408Right-handed alpha
Helix 20
AC2
C
415 419Right-handed 310
Helix 21
AC3
C
424 428Right-handed 310
Helix 22
AC4
C
476 480Right-handed 310
Helix 23
AC5
B
168 178Right-handed alpha
Helix 24
AC6
B
191 194Right-handed 310
Helix 25
AC7
B
195 200Right-handed alpha
Helix 26
AC8
B
346 351Right-handed 310
Helix 27
AC9
B
355 359Right-handed 310
Helix 28
AD1
B
372 378Right-handed alpha
Helix 29
AD2
B
381 385Right-handed 310
Helix 30
AD3
B
394 408Right-handed alpha
Helix 31
AD4
B
415 419Right-handed 310
Helix 32
AD5
B
424 428Right-handed 310
Helix 33
AD6
B
476 480Right-handed 310
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There are 22 sheets in PDB entry 6DBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 26first strand
Strand 2
A
41 54anti-parallel
Strand 3
A
447 453anti-parallel
Strand 4
A
302 309anti-parallel
Strand 5
A
294 296anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 26first strand
Strand 2
A
41 54anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
B
458 464parallel
Strand 5
B
63 70anti-parallel
Strand 6
B
96 105anti-parallel
Strand 7
B
232 239anti-parallel
Strand 8
B
281 288anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
281 288first strand
Strand 2
A
232 239anti-parallel
Strand 3
A
96 105anti-parallel
Strand 4
A
63 70anti-parallel
Strand 5
A
458 464anti-parallel
Strand 6
C
24 36parallel
Strand 7
C
41 54anti-parallel
Strand 8
C
447 453anti-parallel
Strand 9
C
302 309anti-parallel
Strand 10
C
294 296anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 229first strand
Strand 2
A
109 112anti-parallel
Strand 3
A
437 440anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
115 121first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
323 327anti-parallel
Strand 4
A
352 354anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
125 129first strand
Strand 2
A
206 212anti-parallel
Strand 3
A
163 166anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
467 475first strand
Strand 2
A
492 500anti-parallel
Strand 3
A
534 536anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
467 475first strand
Strand 2
A
492 500anti-parallel
Strand 3
A
541 543anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
484 486first strand
Strand 2
A
567 578parallel
Strand 3
A
551 561anti-parallel
Strand 4
A
506 513anti-parallel
Strand 5
A
525 529anti-parallel
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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
281 288first strand
Strand 2
C
232 239anti-parallel
Strand 3
C
96 105anti-parallel
Strand 4
C
63 70anti-parallel
Strand 5
C
458 464anti-parallel
Strand 6
B
24 36parallel
Strand 7
B
41 54anti-parallel
Strand 8
B
447 453anti-parallel
Strand 9
B
302 309anti-parallel
Strand 10
B
294 296anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
227 229first strand
Strand 2
C
109 112anti-parallel
Strand 3
C
437 440anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
115 121first strand
Strand 2
C
217 222anti-parallel
Strand 3
C
323 327anti-parallel
Strand 4
C
352 354anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
125 129first strand
Strand 2
C
206 212anti-parallel
Strand 3
C
163 166anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
467 475first strand
Strand 2
C
492 500anti-parallel
Strand 3
C
534 536anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
467 475first strand
Strand 2
C
492 500anti-parallel
Strand 3
C
541 543anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
484 486first strand
Strand 2
C
567 578parallel
Strand 3
C
551 561anti-parallel
Strand 4
C
506 513anti-parallel
Strand 5
C
525 529anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
227 229first strand
Strand 2
B
109 112anti-parallel
Strand 3
B
437 440anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
115 121first strand
Strand 2
B
217 222anti-parallel
Strand 3
B
323 327anti-parallel
Strand 4
B
352 354anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
125 129first strand
Strand 2
B
206 212anti-parallel
Strand 3
B
163 166anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
467 475first strand
Strand 2
B
492 500anti-parallel
Strand 3
B
534 536anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
467 475first strand
Strand 2
B
492 500anti-parallel
Strand 3
B
541 543anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
484 486first strand
Strand 2
B
567 578parallel
Strand 3
B
551 561anti-parallel
Strand 4
B
506 513anti-parallel
Strand 5
B
525 529anti-parallel
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