Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DBS entry

There are 3 chains in PDB entry 6DBS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 23	HIS 588
C	GLU 23	HIS 588
B	GLU 23	GLY 370

There are 33 helices in PDB entry 6DBS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	168	178	Right-handed alpha
Helix 2	AA2	A	191	194	Right-handed 310
Helix 3	AA3	A	195	200	Right-handed alpha
Helix 4	AA4	A	346	351	Right-handed 310
Helix 5	AA5	A	355	359	Right-handed 310
Helix 6	AA6	A	372	378	Right-handed alpha
Helix 7	AA7	A	381	385	Right-handed 310
Helix 8	AA8	A	394	408	Right-handed alpha
Helix 9	AA9	A	415	419	Right-handed 310
Helix 10	AB1	A	424	428	Right-handed 310
Helix 11	AB2	A	476	480	Right-handed 310
Helix 12	AB3	C	168	178	Right-handed alpha
Helix 13	AB4	C	191	194	Right-handed 310
Helix 14	AB5	C	195	200	Right-handed alpha
Helix 15	AB6	C	346	351	Right-handed 310
Helix 16	AB7	C	355	359	Right-handed 310
Helix 17	AB8	C	372	378	Right-handed alpha
Helix 18	AB9	C	381	385	Right-handed 310
Helix 19	AC1	C	394	408	Right-handed alpha
Helix 20	AC2	C	415	419	Right-handed 310
Helix 21	AC3	C	424	428	Right-handed 310
Helix 22	AC4	C	476	480	Right-handed 310
Helix 23	AC5	B	168	178	Right-handed alpha
Helix 24	AC6	B	191	194	Right-handed 310
Helix 25	AC7	B	195	200	Right-handed alpha
Helix 26	AC8	B	346	351	Right-handed 310
Helix 27	AC9	B	355	359	Right-handed 310
Helix 28	AD1	B	372	378	Right-handed alpha
Helix 29	AD2	B	381	385	Right-handed 310
Helix 30	AD3	B	394	408	Right-handed alpha
Helix 31	AD4	B	415	419	Right-handed 310
Helix 32	AD5	B	424	428	Right-handed 310
Helix 33	AD6	B	476	480	Right-handed 310

There are 22 sheets in PDB entry 6DBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	41	54	anti-parallel
Strand 3	A	447	453	anti-parallel
Strand 4	A	302	309	anti-parallel
Strand 5	A	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	41	54	anti-parallel
Strand 3	A	29	36	anti-parallel
Strand 4	B	458	464	parallel
Strand 5	B	63	70	anti-parallel
Strand 6	B	96	105	anti-parallel
Strand 7	B	232	239	anti-parallel
Strand 8	B	281	288	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	288	first strand
Strand 2	A	232	239	anti-parallel
Strand 3	A	96	105	anti-parallel
Strand 4	A	63	70	anti-parallel
Strand 5	A	458	464	anti-parallel
Strand 6	C	24	36	parallel
Strand 7	C	41	54	anti-parallel
Strand 8	C	447	453	anti-parallel
Strand 9	C	302	309	anti-parallel
Strand 10	C	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	109	112	anti-parallel
Strand 3	A	437	440	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	121	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	206	212	anti-parallel
Strand 3	A	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	475	first strand
Strand 2	A	492	500	anti-parallel
Strand 3	A	534	536	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	475	first strand
Strand 2	A	492	500	anti-parallel
Strand 3	A	541	543	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	486	first strand
Strand 2	A	567	578	parallel
Strand 3	A	551	561	anti-parallel
Strand 4	A	506	513	anti-parallel
Strand 5	A	525	529	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	288	first strand
Strand 2	C	232	239	anti-parallel
Strand 3	C	96	105	anti-parallel
Strand 4	C	63	70	anti-parallel
Strand 5	C	458	464	anti-parallel
Strand 6	B	24	36	parallel
Strand 7	B	41	54	anti-parallel
Strand 8	B	447	453	anti-parallel
Strand 9	B	302	309	anti-parallel
Strand 10	B	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	109	112	anti-parallel
Strand 3	C	437	440	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	121	first strand
Strand 2	C	217	222	anti-parallel
Strand 3	C	323	327	anti-parallel
Strand 4	C	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	206	212	anti-parallel
Strand 3	C	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	475	first strand
Strand 2	C	492	500	anti-parallel
Strand 3	C	534	536	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	475	first strand
Strand 2	C	492	500	anti-parallel
Strand 3	C	541	543	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	484	486	first strand
Strand 2	C	567	578	parallel
Strand 3	C	551	561	anti-parallel
Strand 4	C	506	513	anti-parallel
Strand 5	C	525	529	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	109	112	anti-parallel
Strand 3	B	437	440	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	121	first strand
Strand 2	B	217	222	anti-parallel
Strand 3	B	323	327	anti-parallel
Strand 4	B	352	354	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	206	212	anti-parallel
Strand 3	B	163	166	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	475	first strand
Strand 2	B	492	500	anti-parallel
Strand 3	B	534	536	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	475	first strand
Strand 2	B	492	500	anti-parallel
Strand 3	B	541	543	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	486	first strand
Strand 2	B	567	578	parallel
Strand 3	B	551	561	anti-parallel
Strand 4	B	506	513	anti-parallel
Strand 5	B	525	529	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DBS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBS