Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DBX entry

There are 6 chains in PDB entry 6DBX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 408	HIS 1028
B	MET 1	GLN 351
C	GLY 408	ASN 1030
D	SER 0	GLN 351
E	G 1	G 50
F	C 1	C 50

There are 58 helices in PDB entry 6DBX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	419	442	Right-handed alpha
Helix 2	AA2	A	445	459	Right-handed alpha
Helix 3	AA3	A	460	462	Right-handed 310
Helix 4	AA4	A	463	474	Right-handed alpha
Helix 5	AA5	A	482	492	Right-handed alpha
Helix 6	AA6	A	496	511	Right-handed alpha
Helix 7	AA7	A	518	527	Right-handed alpha
Helix 8	AA8	A	577	589	Right-handed alpha
Helix 9	AA9	A	589	601	Right-handed alpha
Helix 10	AB1	A	670	674	Right-handed 310
Helix 11	AB2	A	686	707	Right-handed alpha
Helix 12	AB3	A	730	739	Right-handed alpha
Helix 13	AB4	A	756	762	Right-handed alpha
Helix 14	AB5	A	771	785	Right-handed alpha
Helix 15	AB6	A	790	799	Right-handed alpha
Helix 16	AB7	A	819	835	Right-handed alpha
Helix 17	AB8	A	844	864	Right-handed alpha
Helix 18	AB9	A	872	880	Right-handed alpha
Helix 19	AC1	A	881	890	Right-handed alpha
Helix 20	AC2	A	894	916	Right-handed alpha
Helix 21	AC3	A	924	946	Right-handed alpha
Helix 22	AC4	A	955	964	Right-handed alpha
Helix 23	AC5	A	964	972	Right-handed alpha
Helix 24	AC6	A	975	983	Right-handed 310
Helix 25	AC7	A	985	997	Right-handed alpha
Helix 26	AC8	A	1001	1017	Right-handed alpha
Helix 27	AC9	A	1018	1023	Right-handed alpha
Helix 28	AD1	B	11	15	Right-handed 310
Helix 29	AD2	B	308	313	Right-handed alpha
Helix 30	AD3	C	414	418	Right-handed 310
Helix 31	AD4	C	419	442	Right-handed alpha
Helix 32	AD5	C	445	460	Right-handed alpha
Helix 33	AD6	C	463	474	Right-handed alpha
Helix 34	AD7	C	483	493	Right-handed alpha
Helix 35	AD8	C	496	510	Right-handed alpha
Helix 36	AD9	C	518	527	Right-handed alpha
Helix 37	AE1	C	577	589	Right-handed alpha
Helix 38	AE2	C	589	600	Right-handed alpha
Helix 39	AE3	C	686	705	Right-handed alpha
Helix 40	AE4	C	730	737	Right-handed alpha
Helix 41	AE5	C	757	762	Right-handed alpha
Helix 42	AE6	C	771	785	Right-handed alpha
Helix 43	AE7	C	790	799	Right-handed alpha
Helix 44	AE8	C	815	834	Right-handed alpha
Helix 45	AE9	C	844	862	Right-handed alpha
Helix 46	AF1	C	872	878	Right-handed alpha
Helix 47	AF2	C	881	890	Right-handed alpha
Helix 48	AF3	C	895	910	Right-handed alpha
Helix 49	AF4	C	911	916	Right-handed alpha
Helix 50	AF5	C	919	924	Right-handed alpha
Helix 51	AF6	C	924	930	Right-handed alpha
Helix 52	AF7	C	930	945	Right-handed alpha
Helix 53	AF8	C	955	964	Right-handed alpha
Helix 54	AF9	C	964	973	Right-handed alpha
Helix 55	AG1	C	980	998	Right-handed alpha
Helix 56	AG2	C	1001	1016	Right-handed alpha
Helix 57	AG3	C	1018	1027	Right-handed alpha
Helix 58	AG4	D	308	314	Right-handed alpha

There are 19 sheets in PDB entry 6DBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	539	first strand
Strand 2	A	708	713	anti-parallel
Strand 3	A	716	728	anti-parallel
Strand 4	A	611	622	parallel
Strand 5	A	639	651	anti-parallel
Strand 6	A	675	680	anti-parallel
Strand 7	A	573	575	anti-parallel
Strand 8	A	554	555	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	539	first strand
Strand 2	A	708	713	anti-parallel
Strand 3	A	716	728	anti-parallel
Strand 4	A	611	622	parallel
Strand 5	A	639	651	anti-parallel
Strand 6	A	660	664	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	346	349	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	318	323	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	346	349	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	343	344	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	46	49	anti-parallel
Strand 4	B	56	59	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	89	93	anti-parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	120	126	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	147	first strand
Strand 2	B	150	156	anti-parallel
Strand 3	B	183	185	anti-parallel
Strand 4	B	193	194	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	176	177	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	215	218	anti-parallel
Strand 3	B	234	238	anti-parallel
Strand 4	B	247	251	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	265	first strand
Strand 2	B	271	273	anti-parallel
Strand 3	B	288	291	anti-parallel
Strand 4	B	298	300	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	539	first strand
Strand 2	C	708	713	anti-parallel
Strand 3	C	716	720	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	555	first strand
Strand 2	C	573	575	anti-parallel
Strand 3	C	675	680	anti-parallel
Strand 4	C	640	651	anti-parallel
Strand 5	C	660	664	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	555	first strand
Strand 2	C	573	575	anti-parallel
Strand 3	C	675	680	anti-parallel
Strand 4	C	640	651	anti-parallel
Strand 5	C	611	619	anti-parallel
Strand 6	C	722	726	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	31	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	54	59	anti-parallel
Strand 5	D	1	8	parallel
Strand 6	D	343	350	anti-parallel
Strand 7	D	326	332	anti-parallel
Strand 8	D	318	323	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	121	127	parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	90	93	anti-parallel
Strand 5	D	76	79	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	147	first strand
Strand 2	D	150	156	anti-parallel
Strand 3	D	181	185	anti-parallel
Strand 4	D	192	196	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	212	first strand
Strand 2	D	215	218	anti-parallel
Strand 3	D	234	238	anti-parallel
Strand 4	D	247	251	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	271	273	anti-parallel
Strand 3	D	288	291	anti-parallel
Strand 4	D	298	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DBX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBX