Analysis of interatomic Contacts of Structural Units in PDB entry:
6DC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DC0 entry

There are 2 chains in PDB entry 6DC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 88TYR 509
B
 SER 89ASN 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6DC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 137Right-handed alpha
Helix 2
AA2
A
166 174Right-handed alpha
Helix 3
AA3
A
178 199Right-handed alpha
Helix 4
AA4
A
207 209Right-handed 310
Helix 5
AA5
A
245 249Right-handed 310
Helix 6
AA6
A
250 256Right-handed alpha
Helix 7
AA7
A
262 280Right-handed alpha
Helix 8
AA8
A
288 299Right-handed alpha
Helix 9
AA9
A
308 319Right-handed alpha
Helix 10
AB1
A
322 326Right-handed 310
Helix 11
AB2
A
328 333Right-handed alpha
Helix 12
AB3
A
336 341Right-handed alpha
Helix 13
AB4
A
507 509Right-handed 310
Helix 14
AB5
B
124 137Right-handed alpha
Helix 15
AB6
B
166 174Right-handed alpha
Helix 16
AB7
B
178 199Right-handed alpha
Helix 17
AB8
B
207 209Right-handed 310
Helix 18
AB9
B
245 249Right-handed 310
Helix 19
AC1
B
250 256Right-handed alpha
Helix 20
AC2
B
262 280Right-handed alpha
Helix 21
AC3
B
288 299Right-handed alpha
Helix 22
AC4
B
308 319Right-handed alpha
Helix 23
AC5
B
322 326Right-handed 310
Helix 24
AC6
B
328 333Right-handed alpha
Helix 25
AC7
B
336 342Right-handed alpha
Helix 26
AC8
B
507 510Right-handed 310
Helix 27
AC9
B
511 516Right-handed alpha
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There are 10 sheets in PDB entry 6DC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
94 97anti-parallel
Strand 3
A
105 110anti-parallel
Strand 4
A
116 123anti-parallel
Strand 5
A
155 160anti-parallel
Strand 6
A
148 151anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
230 231anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
221 223anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
260 261anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
B
504 505anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 505first strand
Strand 2
B
243 244anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
105 109anti-parallel
Strand 3
B
116 123anti-parallel
Strand 4
B
155 160anti-parallel
Strand 5
B
148 151anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
230 231anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
221 223anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
260 261anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il