Analysis of interatomic Contacts of Structural Units in PDB entry:
6DC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DC1 entry

There are 12 chains in PDB entry 6DC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	LEU 253
B	ALA 1	GLY 252
C	ALA 1	GLU 251
D	LEU 2	GLU 251
E	LEU 2	GLY 252
F	LEU 2	HIS 263
G	LEU 2	GLY 252
H	LEU 2	LEU 250
I	LEU 2	LEU 253
J	LEU 2	LEU 253
K	ALA 1	GLU 251
L	LEU 2	GLY 254

There are140 helices in PDB entry 6DC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	43	Right-handed alpha
Helix 2	AA2	A	55	57	Right-handed 310
Helix 3	AA3	A	58	73	Right-handed alpha
Helix 4	AA4	A	85	96	Right-handed alpha
Helix 5	AA5	A	103	109	Right-handed alpha
Helix 6	AA6	A	110	121	Right-handed alpha
Helix 7	AA7	A	153	163	Right-handed alpha
Helix 8	AA8	A	174	176	Right-handed 310
Helix 9	AA9	A	183	191	Right-handed alpha
Helix 10	AB1	A	207	216	Right-handed alpha
Helix 11	AB2	A	224	229	Right-handed alpha
Helix 12	AB3	A	233	244	Right-handed alpha
Helix 13	AB4	B	31	43	Right-handed alpha
Helix 14	AB5	B	57	73	Right-handed alpha
Helix 15	AB6	B	85	95	Right-handed alpha
Helix 16	AB7	B	103	109	Right-handed alpha
Helix 17	AB8	B	109	121	Right-handed alpha
Helix 18	AB9	B	153	164	Right-handed alpha
Helix 19	AC1	B	174	176	Right-handed 310
Helix 20	AC2	B	183	191	Right-handed alpha
Helix 21	AC3	B	192	194	Right-handed 310
Helix 22	AC4	B	207	216	Right-handed alpha
Helix 23	AC5	B	224	229	Right-handed alpha
Helix 24	AC6	B	233	244	Right-handed alpha
Helix 25	AC7	C	31	43	Right-handed alpha
Helix 26	AC8	C	59	73	Right-handed alpha
Helix 27	AC9	C	85	95	Right-handed alpha
Helix 28	AD1	C	103	109	Right-handed alpha
Helix 29	AD2	C	110	121	Right-handed alpha
Helix 30	AD3	C	153	163	Right-handed alpha
Helix 31	AD4	C	183	191	Right-handed alpha
Helix 32	AD5	C	207	216	Right-handed alpha
Helix 33	AD6	C	224	229	Right-handed alpha
Helix 34	AD7	C	233	244	Right-handed alpha
Helix 35	AD8	D	31	43	Right-handed alpha
Helix 36	AD9	D	60	73	Right-handed alpha
Helix 37	AE1	D	85	96	Right-handed alpha
Helix 38	AE2	D	103	109	Right-handed alpha
Helix 39	AE3	D	110	121	Right-handed alpha
Helix 40	AE4	D	153	164	Right-handed alpha
Helix 41	AE5	D	174	176	Right-handed 310
Helix 42	AE6	D	183	191	Right-handed alpha
Helix 43	AE7	D	206	216	Right-handed alpha
Helix 44	AE8	D	224	229	Right-handed alpha
Helix 45	AE9	D	233	244	Right-handed alpha
Helix 46	AF1	E	31	43	Right-handed alpha
Helix 47	AF2	E	58	70	Right-handed alpha
Helix 48	AF3	E	85	94	Right-handed alpha
Helix 49	AF4	E	103	109	Right-handed alpha
Helix 50	AF5	E	110	121	Right-handed alpha
Helix 51	AF6	E	153	164	Right-handed alpha
Helix 52	AF7	E	174	176	Right-handed 310
Helix 53	AF8	E	183	191	Right-handed alpha
Helix 54	AF9	E	207	216	Right-handed alpha
Helix 55	AG1	E	224	229	Right-handed alpha
Helix 56	AG2	E	233	244	Right-handed alpha
Helix 57	AG3	F	31	43	Right-handed alpha
Helix 58	AG4	F	58	73	Right-handed alpha
Helix 59	AG5	F	85	96	Right-handed alpha
Helix 60	AG6	F	103	109	Right-handed alpha
Helix 61	AG7	F	109	121	Right-handed alpha
Helix 62	AG8	F	153	163	Right-handed alpha
Helix 63	AG9	F	174	176	Right-handed 310
Helix 64	AH1	F	183	191	Right-handed alpha
Helix 65	AH2	F	192	194	Right-handed 310
Helix 66	AH3	F	207	216	Right-handed alpha
Helix 67	AH4	F	224	229	Right-handed alpha
Helix 68	AH5	F	233	244	Right-handed alpha
Helix 69	AH6	G	31	42	Right-handed alpha
Helix 70	AH7	G	55	59	Right-handed 310
Helix 71	AH8	G	60	73	Right-handed alpha
Helix 72	AH9	G	85	95	Right-handed alpha
Helix 73	AI1	G	103	109	Right-handed alpha
Helix 74	AI2	G	109	121	Right-handed alpha
Helix 75	AI3	G	153	163	Right-handed alpha
Helix 76	AI4	G	174	176	Right-handed 310
Helix 77	AI5	G	183	191	Right-handed alpha
Helix 78	AI6	G	207	217	Right-handed alpha
Helix 79	AI7	G	224	229	Right-handed alpha
Helix 80	AI8	G	233	244	Right-handed alpha
Helix 81	AI9	H	31	43	Right-handed alpha
Helix 82	AJ1	H	55	57	Right-handed 310
Helix 83	AJ2	H	58	73	Right-handed alpha
Helix 84	AJ3	H	85	96	Right-handed alpha
Helix 85	AJ4	H	103	109	Right-handed alpha
Helix 86	AJ5	H	110	121	Right-handed alpha
Helix 87	AJ6	H	153	163	Right-handed alpha
Helix 88	AJ7	H	174	176	Right-handed 310
Helix 89	AJ8	H	183	191	Right-handed alpha
Helix 90	AJ9	H	192	194	Right-handed 310
Helix 91	AK1	H	207	216	Right-handed alpha
Helix 92	AK2	H	224	229	Right-handed alpha
Helix 93	AK3	H	233	244	Right-handed alpha
Helix 94	AK4	I	31	43	Right-handed alpha
Helix 95	AK5	I	59	61	Right-handed 310
Helix 96	AK6	I	62	73	Right-handed alpha
Helix 97	AK7	I	85	96	Right-handed alpha
Helix 98	AK8	I	103	109	Right-handed alpha
Helix 99	AK9	I	111	121	Right-handed alpha
Helix 100	AL1	I	152	164	Right-handed alpha
Helix 101	AL2	I	183	191	Right-handed alpha
Helix 102	AL3	I	206	216	Right-handed alpha
Helix 103	AL4	I	224	229	Right-handed alpha
Helix 104	AL5	I	233	244	Right-handed alpha
Helix 105	AL6	J	31	43	Right-handed alpha
Helix 106	AL7	J	58	73	Right-handed alpha
Helix 107	AL8	J	85	96	Right-handed alpha
Helix 108	AL9	J	103	108	Right-handed alpha
Helix 109	AM1	J	110	121	Right-handed alpha
Helix 110	AM2	J	153	164	Right-handed alpha
Helix 111	AM3	J	174	176	Right-handed 310
Helix 112	AM4	J	183	191	Right-handed alpha
Helix 113	AM5	J	206	216	Right-handed alpha
Helix 114	AM6	J	224	229	Right-handed alpha
Helix 115	AM7	J	233	244	Right-handed alpha
Helix 116	AM8	K	31	43	Right-handed alpha
Helix 117	AM9	K	55	59	Right-handed 310
Helix 118	AN1	K	60	73	Right-handed alpha
Helix 119	AN2	K	85	96	Right-handed alpha
Helix 120	AN3	K	103	109	Right-handed alpha
Helix 121	AN4	K	110	121	Right-handed alpha
Helix 122	AN5	K	153	163	Right-handed alpha
Helix 123	AN6	K	183	191	Right-handed alpha
Helix 124	AN7	K	192	194	Right-handed 310
Helix 125	AN8	K	206	217	Right-handed alpha
Helix 126	AN9	K	224	229	Right-handed alpha
Helix 127	AO1	K	233	244	Right-handed alpha
Helix 128	AO2	L	31	43	Right-handed alpha
Helix 129	AO3	L	55	59	Right-handed 310
Helix 130	AO4	L	60	73	Right-handed alpha
Helix 131	AO5	L	85	95	Right-handed alpha
Helix 132	AO6	L	103	109	Right-handed alpha
Helix 133	AO7	L	111	121	Right-handed alpha
Helix 134	AO8	L	153	164	Right-handed alpha
Helix 135	AO9	L	174	176	Right-handed 310
Helix 136	AP1	L	183	191	Right-handed alpha
Helix 137	AP2	L	192	194	Right-handed 310
Helix 138	AP3	L	206	217	Right-handed alpha
Helix 139	AP4	L	224	229	Right-handed alpha
Helix 140	AP5	L	233	244	Right-handed alpha

There are 21 sheets in PDB entry 6DC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	5	13	anti-parallel
Strand 3	A	46	51	parallel
Strand 4	A	77	80	parallel
Strand 5	A	99	102	parallel
Strand 6	A	125	133	parallel
Strand 7	A	138	142	anti-parallel
Strand 8	A	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	5	13	anti-parallel
Strand 3	A	220	223	parallel
Strand 4	A	198	201	parallel
Strand 5	A	167	172	parallel
Strand 6	A	125	133	parallel
Strand 7	A	138	142	anti-parallel
Strand 8	A	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	5	13	anti-parallel
Strand 3	B	46	51	parallel
Strand 4	B	77	80	parallel
Strand 5	B	99	102	parallel
Strand 6	B	125	133	parallel
Strand 7	B	138	142	anti-parallel
Strand 8	B	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	5	13	anti-parallel
Strand 3	B	220	223	parallel
Strand 4	B	198	201	parallel
Strand 5	B	167	172	parallel
Strand 6	B	125	133	parallel
Strand 7	B	138	142	anti-parallel
Strand 8	B	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	125	134	anti-parallel
Strand 4	C	167	172	parallel
Strand 5	C	198	201	parallel
Strand 6	C	220	223	parallel
Strand 7	C	5	12	parallel
Strand 8	C	46	51	parallel
Strand 9	C	77	80	parallel
Strand 10	C	99	101	parallel
Strand 11	C	125	134	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	5	13	anti-parallel
Strand 3	D	47	51	parallel
Strand 4	D	77	80	parallel
Strand 5	D	99	102	parallel
Strand 6	D	125	134	parallel
Strand 7	D	137	142	anti-parallel
Strand 8	D	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	5	13	anti-parallel
Strand 3	D	220	223	parallel
Strand 4	D	198	201	parallel
Strand 5	D	167	172	parallel
Strand 6	D	125	134	parallel
Strand 7	D	137	142	anti-parallel
Strand 8	D	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	17	first strand
Strand 2	E	5	13	anti-parallel
Strand 3	E	46	51	parallel
Strand 4	E	77	80	parallel
Strand 5	E	99	102	parallel
Strand 6	E	125	134	parallel
Strand 7	E	137	142	anti-parallel
Strand 8	E	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	17	first strand
Strand 2	E	5	13	anti-parallel
Strand 3	E	220	223	parallel
Strand 4	E	198	201	parallel
Strand 5	E	167	172	parallel
Strand 6	E	125	134	parallel
Strand 7	E	137	142	anti-parallel
Strand 8	E	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	152	first strand
Strand 2	F	138	142	anti-parallel
Strand 3	F	125	133	anti-parallel
Strand 4	F	167	172	parallel
Strand 5	F	198	201	parallel
Strand 6	F	220	223	parallel
Strand 7	F	5	12	parallel
Strand 8	F	46	51	parallel
Strand 9	F	77	80	parallel
Strand 10	F	99	102	parallel
Strand 11	F	125	133	parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	152	first strand
Strand 2	G	137	142	anti-parallel
Strand 3	G	125	134	anti-parallel
Strand 4	G	167	172	parallel
Strand 5	G	198	201	parallel
Strand 6	G	220	223	parallel
Strand 7	G	5	12	parallel
Strand 8	G	46	51	parallel
Strand 9	G	77	80	parallel
Strand 10	G	99	102	parallel
Strand 11	G	125	134	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	17	first strand
Strand 2	H	5	13	anti-parallel
Strand 3	H	46	51	parallel
Strand 4	H	77	80	parallel
Strand 5	H	99	102	parallel
Strand 6	H	125	134	parallel
Strand 7	H	137	141	anti-parallel
Strand 8	H	148	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	17	first strand
Strand 2	H	5	13	anti-parallel
Strand 3	H	220	223	parallel
Strand 4	H	198	201	parallel
Strand 5	H	167	172	parallel
Strand 6	H	125	134	parallel
Strand 7	H	137	141	anti-parallel
Strand 8	H	148	152	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	17	first strand
Strand 2	I	5	13	anti-parallel
Strand 3	I	46	51	parallel
Strand 4	I	77	80	parallel
Strand 5	I	99	102	parallel
Strand 6	I	125	134	parallel
Strand 7	I	137	141	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	17	first strand
Strand 2	I	5	13	anti-parallel
Strand 3	I	220	223	parallel
Strand 4	I	198	201	parallel
Strand 5	I	167	172	parallel
Strand 6	I	125	134	parallel
Strand 7	I	137	141	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	16	17	first strand
Strand 2	J	5	13	anti-parallel
Strand 3	J	46	51	parallel
Strand 4	J	77	80	parallel
Strand 5	J	99	102	parallel
Strand 6	J	125	133	parallel
Strand 7	J	138	142	anti-parallel
Strand 8	J	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	16	17	first strand
Strand 2	J	5	13	anti-parallel
Strand 3	J	220	223	parallel
Strand 4	J	198	201	parallel
Strand 5	J	167	172	parallel
Strand 6	J	125	133	parallel
Strand 7	J	138	142	anti-parallel
Strand 8	J	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	17	first strand
Strand 2	K	5	13	anti-parallel
Strand 3	K	46	51	parallel
Strand 4	K	77	80	parallel
Strand 5	K	99	102	parallel
Strand 6	K	125	134	parallel
Strand 7	K	137	142	anti-parallel
Strand 8	K	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	17	first strand
Strand 2	K	5	13	anti-parallel
Strand 3	K	220	223	parallel
Strand 4	K	198	201	parallel
Strand 5	K	167	172	parallel
Strand 6	K	125	134	parallel
Strand 7	K	137	142	anti-parallel
Strand 8	K	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	16	17	first strand
Strand 2	L	5	13	anti-parallel
Strand 3	L	46	51	parallel
Strand 4	L	78	80	parallel
Strand 5	L	99	102	parallel
Strand 6	L	125	133	parallel
Strand 7	L	138	142	anti-parallel
Strand 8	L	147	152	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	16	17	first strand
Strand 2	L	5	13	anti-parallel
Strand 3	L	220	223	parallel
Strand 4	L	198	201	parallel
Strand 5	L	167	172	parallel
Strand 6	L	125	133	parallel
Strand 7	L	138	142	anti-parallel
Strand 8	L	147	152	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DC1