Analysis of interatomic Contacts of Structural Units in PDB entry:
6DC6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DC6 entry

There are 3 chains in PDB entry 6DC6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 49	ILE 1057
B	MET 1	GLY 76
C	ASP 49	VAL 253

There are 83 helices in PDB entry 6DC6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	72	Right-handed alpha
Helix 2	AA2	A	81	95	Right-handed alpha
Helix 3	AA3	A	108	112	Right-handed 310
Helix 4	AA4	A	126	131	Right-handed alpha
Helix 5	AA5	A	131	136	Right-handed alpha
Helix 6	AA6	A	155	159	Right-handed 310
Helix 7	AA7	A	168	183	Right-handed alpha
Helix 8	AA8	A	305	312	Right-handed alpha
Helix 9	AA9	A	319	323	Right-handed 310
Helix 10	AB1	A	324	343	Right-handed alpha
Helix 11	AB2	A	352	368	Right-handed alpha
Helix 12	AB3	A	379	389	Right-handed alpha
Helix 13	AB4	A	394	413	Right-handed alpha
Helix 14	AB5	A	429	432	Right-handed 310
Helix 15	AB6	A	451	456	Right-handed alpha
Helix 16	AB7	A	459	468	Right-handed alpha
Helix 17	AB8	A	477	491	Right-handed alpha
Helix 18	AB9	A	509	515	Right-handed 310
Helix 19	AC1	A	527	540	Right-handed alpha
Helix 20	AC2	A	554	558	Right-handed 310
Helix 21	AC3	A	561	567	Right-handed alpha
Helix 22	AC4	A	577	591	Right-handed alpha
Helix 23	AC5	A	617	621	Right-handed 310
Helix 24	AC6	A	631	636	Right-handed alpha
Helix 25	AC7	A	640	656	Right-handed alpha
Helix 26	AC8	A	656	669	Right-handed alpha
Helix 27	AC9	A	671	679	Right-handed alpha
Helix 28	AD1	A	683	696	Right-handed alpha
Helix 29	AD2	A	702	719	Right-handed alpha
Helix 30	AD3	A	719	729	Right-handed alpha
Helix 31	AD4	A	758	777	Right-handed alpha
Helix 32	AD5	A	783	792	Right-handed alpha
Helix 33	AD6	A	822	833	Right-handed alpha
Helix 34	AD7	A	857	873	Right-handed alpha
Helix 35	AD8	A	879	888	Right-handed alpha
Helix 36	AD9	A	894	913	Right-handed alpha
Helix 37	AE1	A	971	982	Right-handed alpha
Helix 38	AE2	A	1003	1012	Right-handed alpha
Helix 39	AE3	A	1014	1023	Right-handed alpha
Helix 40	AE4	B	22	32	Right-handed alpha
Helix 41	AE5	B	37	41	Right-handed 310
Helix 42	AE6	C	55	72	Right-handed alpha
Helix 43	AE7	C	82	95	Right-handed alpha
Helix 44	AE8	C	126	131	Right-handed alpha
Helix 45	AE9	C	131	136	Right-handed alpha
Helix 46	AF1	C	152	157	Right-handed alpha
Helix 47	AF2	C	168	182	Right-handed alpha
Helix 48	AF3	C	258	262	Right-handed 310
Helix 49	AF4	C	305	312	Right-handed alpha
Helix 50	AF5	C	324	343	Right-handed alpha
Helix 51	AF6	C	351	368	Right-handed alpha
Helix 52	AF7	C	379	389	Right-handed alpha
Helix 53	AF8	C	394	413	Right-handed alpha
Helix 54	AF9	C	429	432	Right-handed 310
Helix 55	AG1	C	433	437	Right-handed 310
Helix 56	AG2	C	439	444	Right-handed alpha
Helix 57	AG3	C	451	456	Right-handed alpha
Helix 58	AG4	C	459	468	Right-handed alpha
Helix 59	AG5	C	477	491	Right-handed alpha
Helix 60	AG6	C	509	515	Right-handed 310
Helix 61	AG7	C	527	540	Right-handed alpha
Helix 62	AG8	C	554	558	Right-handed 310
Helix 63	AG9	C	561	567	Right-handed alpha
Helix 64	AH1	C	577	591	Right-handed alpha
Helix 65	AH2	C	617	621	Right-handed 310
Helix 66	AH3	C	631	636	Right-handed alpha
Helix 67	AH4	C	640	656	Right-handed alpha
Helix 68	AH5	C	656	669	Right-handed alpha
Helix 69	AH6	C	671	677	Right-handed alpha
Helix 70	AH7	C	681	696	Right-handed alpha
Helix 71	AH8	C	702	719	Right-handed alpha
Helix 72	AH9	C	719	729	Right-handed alpha
Helix 73	AI1	C	758	777	Right-handed alpha
Helix 74	AI2	C	783	792	Right-handed alpha
Helix 75	AI3	C	817	833	Right-handed alpha
Helix 76	AI4	C	857	873	Right-handed alpha
Helix 77	AI5	C	879	888	Right-handed alpha
Helix 78	AI6	C	894	915	Right-handed alpha
Helix 79	AI7	C	971	982	Right-handed alpha
Helix 80	AI8	C	1003	1012	Right-handed alpha
Helix 81	AI9	C	1014	1023	Right-handed alpha
Helix 82	AJ1	D	22	32	Right-handed alpha
Helix 83	AJ2	D	37	41	Right-handed 310

There are 16 sheets in PDB entry 6DC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	98	102	parallel
Strand 3	A	74	78	parallel
Strand 4	A	161	165	parallel
Strand 5	A	185	192	parallel
Strand 6	A	195	201	anti-parallel
Strand 7	A	423	427	anti-parallel
Strand 8	A	315	316	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	299	301	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	247	251	anti-parallel
Strand 3	A	291	295	anti-parallel
Strand 4	A	218	224	anti-parallel
Strand 5	A	229	234	anti-parallel
Strand 6	A	274	279	anti-parallel
Strand 7	A	268	269	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	548	first strand
Strand 2	A	499	503	parallel
Strand 3	A	470	474	parallel
Strand 4	A	570	573	parallel
Strand 5	A	595	601	parallel
Strand 6	A	604	610	anti-parallel
Strand 7	A	924	928	anti-parallel
Strand 8	A	933	937	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	947	first strand
Strand 2	A	950	953	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	957	961	first strand
Strand 2	A	1052	1056	parallel
Strand 3	A	1035	1041	anti-parallel
Strand 4	A	986	992	anti-parallel
Strand 5	A	995	999	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	957	961	first strand
Strand 2	A	1052	1056	parallel
Strand 3	A	1035	1041	anti-parallel
Strand 4	A	1047	1049	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	66	70	parallel
Strand 4	B	42	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	98	102	parallel
Strand 3	C	74	78	parallel
Strand 4	C	161	165	parallel
Strand 5	C	185	192	parallel
Strand 6	C	195	201	anti-parallel
Strand 7	C	423	427	anti-parallel
Strand 8	C	315	317	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	299	301	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	266	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	291	295	anti-parallel
Strand 4	C	218	224	anti-parallel
Strand 5	C	231	234	anti-parallel
Strand 6	C	274	276	anti-parallel
Strand 7	C	268	269	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	545	548	first strand
Strand 2	C	499	503	parallel
Strand 3	C	470	474	parallel
Strand 4	C	570	573	parallel
Strand 5	C	595	601	parallel
Strand 6	C	604	610	anti-parallel
Strand 7	C	924	928	anti-parallel
Strand 8	C	933	937	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	946	first strand
Strand 2	C	951	953	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	958	961	first strand
Strand 2	C	1053	1056	parallel
Strand 3	C	1033	1041	anti-parallel
Strand 4	C	986	992	anti-parallel
Strand 5	C	995	999	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	958	961	first strand
Strand 2	C	1053	1056	parallel
Strand 3	C	1033	1041	anti-parallel
Strand 4	C	1047	1048	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	65	70	parallel
Strand 4	D	42	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DC6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DC6