Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DCC entry

There are 2 chains in PDB entry 6DCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 412PRO 687
B
 G 2 A 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6DCC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
420 426Right-handed alpha
Helix 2
AA2
A
431 436Right-handed 310
Helix 3
AA3
A
438 442Right-handed 310
Helix 4
AA4
A
455 465Right-handed alpha
Helix 5
AA5
A
476 487Right-handed alpha
Helix 6
AA6
A
488 491Right-handed 310
Helix 7
AA7
A
564 569Right-handed alpha
Helix 8
AA8
A
583 606Right-handed alpha
Helix 9
AA9
A
619 627Right-handed 310
Helix 10
AB1
A
630 640Right-handed alpha
Helix 11
AB2
A
643 645Right-handed 310
Helix 12
AB3
A
646 652Right-handed alpha
Helix 13
AB4
A
671 675Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6DCC.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 557first strand
Strand 2
A
469 474parallel
Strand 3
A
446 450parallel
Strand 4
A
575 581parallel
Strand 5
A
607 616parallel
Strand 6
A
678 682anti-parallel
Strand 7
A
660 665anti-parallel
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