Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DCD entry

There is 1 chain in PDB entry 6DCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLY 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6DCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
19 30Right-handed alpha
Helix 3
AA3
A
45 55Right-handed alpha
Helix 4
AA4
A
81 88Right-handed alpha
Helix 5
AA5
A
89 92Right-handed 310
Helix 6
AA6
A
97 101Right-handed 310
Helix 7
AA7
A
104 112Right-handed alpha
Helix 8
AA8
A
113 117Right-handed 310
Helix 9
AA9
A
118 139Right-handed alpha
Helix 10
AB1
A
140 143Right-handed 310
Helix 11
AB2
A
148 152Right-handed alpha
Helix 12
AB3
A
152 165Right-handed alpha
Helix 13
AB4
A
168 170Right-handed 310
Helix 14
AB5
A
171 180Right-handed alpha
Helix 15
AB6
A
198 217Right-handed alpha
Helix 16
AB7
A
221 228Right-handed alpha
Helix 17
AB8
A
238 271Right-handed alpha
Helix 18
AB9
A
271 281Right-handed alpha
Helix 19
AC1
A
284 296Right-handed alpha
Helix 20
AC2
A
326 331Right-handed alpha
Helix 21
AC3
A
349 353Right-handed 310
Helix 22
AC4
A
365 383Right-handed alpha
Helix 23
AC5
A
390 395Right-handed alpha
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There are 3 sheets in PDB entry 6DCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
41 43anti-parallel
Strand 3
A
322 325parallel
Strand 4
A
302 306anti-parallel
Strand 5
A
59 60anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
417 422anti-parallel
Strand 3
A
384 389anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
315 317anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il