Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DCF entry

There are 9 chains in PDB entry 6DCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	ALA 25	ARG 109
A	LEU 2	GLY 220
B	LEU 2	GLY 235
C	VAL 23	ARG 1139
D	ASP 3	ALA 1282
E	ALA 25	GLY 106
F	ASP 164	LEU 465
O	G 1	T 31
P	A 1	C 26

There are107 helices in PDB entry 6DCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	80	87	Right-handed alpha
Helix 2	AA2	J	90	109	Right-handed alpha
Helix 3	AA3	A	29	46	Right-handed alpha
Helix 4	AA4	A	72	81	Right-handed alpha
Helix 5	AA5	A	108	110	Right-handed 310
Helix 6	AA6	A	203	217	Right-handed alpha
Helix 7	AA7	B	30	45	Right-handed alpha
Helix 8	AA8	B	72	82	Right-handed alpha
Helix 9	AA9	B	203	224	Right-handed alpha
Helix 10	AB1	C	45	57	Right-handed alpha
Helix 11	AB2	C	60	66	Right-handed 310
Helix 12	AB3	C	75	85	Right-handed alpha
Helix 13	AB4	C	109	116	Right-handed alpha
Helix 14	AB5	C	371	398	Right-handed alpha
Helix 15	AB6	C	404	409	Right-handed alpha
Helix 16	AB7	C	411	425	Right-handed alpha
Helix 17	AB8	C	435	443	Right-handed alpha
Helix 18	AB9	C	476	479	Right-handed 310
Helix 19	AC1	C	523	529	Right-handed alpha
Helix 20	AC2	C	579	584	Right-handed alpha
Helix 21	AC3	C	592	604	Right-handed alpha
Helix 22	AC4	C	620	630	Right-handed alpha
Helix 23	AC5	C	730	735	Right-handed alpha
Helix 24	AC6	C	807	817	Right-handed alpha
Helix 25	AC7	C	912	917	Right-handed alpha
Helix 26	AC8	C	918	934	Right-handed alpha
Helix 27	AC9	C	944	948	Right-handed 310
Helix 28	AD1	C	972	982	Right-handed alpha
Helix 29	AD2	C	1027	1032	Right-handed alpha
Helix 30	AD3	C	1060	1070	Right-handed alpha
Helix 31	AD4	C	1072	1081	Right-handed alpha
Helix 32	AD5	C	1088	1100	Right-handed alpha
Helix 33	AD6	C	1109	1122	Right-handed alpha
Helix 34	AD7	D	16	24	Right-handed alpha
Helix 35	AD8	D	84	90	Right-handed 310
Helix 36	AD9	D	103	108	Right-handed alpha
Helix 37	AE1	D	112	119	Right-handed alpha
Helix 38	AE2	D	121	130	Right-handed alpha
Helix 39	AE3	D	140	187	Right-handed alpha
Helix 40	AE4	D	192	228	Right-handed alpha
Helix 41	AE5	D	238	247	Right-handed alpha
Helix 42	AE6	D	256	267	Right-handed alpha
Helix 43	AE7	D	269	279	Right-handed alpha
Helix 44	AE8	D	286	305	Right-handed alpha
Helix 45	AE9	D	308	311	Right-handed 310
Helix 46	AF1	D	321	325	Right-handed 310
Helix 47	AF2	D	331	333	Right-handed 310
Helix 48	AF3	D	338	360	Right-handed alpha
Helix 49	AF4	D	363	383	Right-handed alpha
Helix 50	AF5	D	401	408	Right-handed alpha
Helix 51	AF6	D	445	452	Right-handed alpha
Helix 52	AF7	D	452	463	Right-handed alpha
Helix 53	AF8	D	468	478	Right-handed alpha
Helix 54	AF9	D	480	482	Right-handed 310
Helix 55	AG1	D	483	492	Right-handed alpha
Helix 56	AG2	D	505	507	Right-handed 310
Helix 57	AG3	D	528	533	Right-handed alpha
Helix 58	AG4	D	548	558	Right-handed alpha
Helix 59	AG5	D	580	590	Right-handed alpha
Helix 60	AG6	D	614	624	Right-handed alpha
Helix 61	AG7	D	643	651	Right-handed alpha
Helix 62	AG8	D	666	676	Right-handed alpha
Helix 63	AG9	D	688	703	Right-handed alpha
Helix 64	AH1	D	704	726	Right-handed alpha
Helix 65	AH2	D	741	755	Right-handed alpha
Helix 66	AH3	D	755	760	Right-handed alpha
Helix 67	AH4	D	767	791	Right-handed alpha
Helix 68	AH5	D	796	805	Right-handed alpha
Helix 69	AH6	D	868	881	Right-handed alpha
Helix 70	AH7	D	914	919	Right-handed alpha
Helix 71	AH8	D	944	955	Right-handed alpha
Helix 72	AH9	D	975	979	Right-handed alpha
Helix 73	AI1	D	993	1004	Right-handed alpha
Helix 74	AI2	D	1005	1007	Right-handed 310
Helix 75	AI3	D	1028	1037	Right-handed alpha
Helix 76	AI4	D	1118	1127	Right-handed alpha
Helix 77	AI5	D	1127	1146	Right-handed alpha
Helix 78	AI6	D	1151	1161	Right-handed alpha
Helix 79	AI7	D	1184	1189	Right-handed alpha
Helix 80	AI8	D	1210	1217	Right-handed alpha
Helix 81	AI9	D	1220	1228	Right-handed alpha
Helix 82	AJ1	D	1229	1240	Right-handed alpha
Helix 83	AJ2	D	1248	1256	Right-handed alpha
Helix 84	AJ3	D	1261	1264	Right-handed 310
Helix 85	AJ4	D	1265	1270	Right-handed alpha
Helix 86	AJ5	D	1276	1282	Right-handed alpha
Helix 87	AJ6	E	30	34	Right-handed 310
Helix 88	AJ7	E	36	42	Right-handed alpha
Helix 89	AJ8	E	46	67	Right-handed alpha
Helix 90	AJ9	E	87	98	Right-handed alpha
Helix 91	AK1	F	165	174	Right-handed alpha
Helix 92	AK2	F	180	208	Right-handed alpha
Helix 93	AK3	F	212	237	Right-handed alpha
Helix 94	AK4	F	237	246	Right-handed alpha
Helix 95	AK5	F	254	273	Right-handed alpha
Helix 96	AK6	F	274	278	Right-handed 310
Helix 97	AK7	F	280	301	Right-handed alpha
Helix 98	AK8	F	307	329	Right-handed alpha
Helix 99	AK9	F	333	342	Right-handed alpha
Helix 100	AL1	F	344	355	Right-handed alpha
Helix 101	AL2	F	372	377	Right-handed 310
Helix 102	AL3	F	384	402	Right-handed alpha
Helix 103	AL4	F	406	418	Right-handed alpha
Helix 104	AL5	F	426	435	Right-handed alpha
Helix 105	AL6	F	437	453	Right-handed alpha
Helix 106	AL7	F	454	459	Right-handed alpha
Helix 107	AL8	F	460	463	Right-handed 310

There are 37 sheets in PDB entry 6DCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	43	first strand
Strand 2	J	29	33	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	179	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	171	181	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	93	100	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	126	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	121	126	anti-parallel
Strand 3	C	143	149	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	445	447	parallel
Strand 3	C	488	491	anti-parallel
Strand 4	C	474	475	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	508	anti-parallel
Strand 3	C	519	522	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	668	first strand
Strand 2	C	674	675	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	700	first strand
Strand 2	C	703	704	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	878	anti-parallel
Strand 4	C	883	890	anti-parallel
Strand 5	C	726	729	parallel
Strand 6	C	906	907	anti-parallel
Strand 7	C	707	713	parallel
Strand 8	C	1014	1023	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	749	first strand
Strand 2	C	859	868	anti-parallel
Strand 3	C	836	844	anti-parallel
Strand 4	C	786	787	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	797	798	first strand
Strand 2	C	824	825	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1057	1059	first strand
Strand 2	D	420	422	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1135	1136	first strand
Strand 2	C	1127	1129	anti-parallel
Strand 3	D	9	11	anti-parallel
Strand 4	D	1243	1244	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	359	360	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	634	637	parallel
Strand 3	D	661	664	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	898	first strand
Strand 2	D	959	961	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	928	929	first strand
Strand 2	D	935	936	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1044	1045	first strand
Strand 2	D	1116	1117	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1081	first strand
Strand 2	D	1063	1069	anti-parallel
Strand 3	D	1052	1058	anti-parallel
Strand 4	D	1105	1106	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1183	first strand
Strand 2	D	1165	1168	anti-parallel
Strand 3	D	1204	1206	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCF