Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DCH entry

There is 1 chain in PDB entry 6DCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 28ILE 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6DCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 69Right-handed alpha
Helix 2
AA2
A
79 91Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
164 170Right-handed alpha
Helix 5
AA5
A
172 180Right-handed alpha
Helix 6
AA6
A
195 199Right-handed 310
Helix 7
AA7
A
202 214Right-handed alpha
Helix 8
AA8
A
253 264Right-handed alpha
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There are 5 sheets in PDB entry 6DCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
70 73parallel
Strand 4
A
285 289anti-parallel
Strand 5
A
144 151anti-parallel
Strand 6
A
307 314anti-parallel
Strand 7
A
92 93anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
70 73parallel
Strand 4
A
285 289anti-parallel
Strand 5
A
144 151anti-parallel
Strand 6
A
307 314anti-parallel
Strand 7
A
110 113anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 278first strand
Strand 2
A
159 163anti-parallel
Strand 3
A
293 297anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
183 186anti-parallel
Strand 3
A
240 244anti-parallel
Strand 4
A
250 251anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
231 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il