Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DCL entry

There are 4 chains in PDB entry 6DCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7SER 188
B
 LYS 8LYS 183
C
 A 1 C 11
D
 A 1 C 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6DCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 13Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
64 74Right-handed alpha
Helix 5
AA5
A
91 96Right-handed alpha
Helix 6
AA6
A
117 126Right-handed alpha
Helix 7
AA7
A
127 129Right-handed 310
Helix 8
AA8
A
155 164Right-handed alpha
Helix 9
AA9
A
182 187Right-handed alpha
Helix 10
AB1
B
10 13Right-handed 310
Helix 11
AB2
B
26 35Right-handed alpha
Helix 12
AB3
B
36 38Right-handed 310
Helix 13
AB4
B
64 74Right-handed alpha
Helix 14
AB5
B
91 96Right-handed alpha
Helix 15
AB6
B
117 126Right-handed alpha
Helix 16
AB7
B
127 129Right-handed 310
Helix 17
AB8
B
155 164Right-handed alpha
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There are 6 sheets in PDB entry 6DCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 47first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
15 19anti-parallel
Strand 4
A
82 88anti-parallel
Strand 5
A
77 79anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 138first strand
Strand 2
A
145 153anti-parallel
Strand 3
A
106 110anti-parallel
Strand 4
A
176 179anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
173 174anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 47first strand
Strand 2
B
54 62anti-parallel
Strand 3
B
15 19anti-parallel
Strand 4
B
82 88anti-parallel
Strand 5
B
77 79anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 136first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
106 110anti-parallel
Strand 4
B
176 179anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
173 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il