Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DCR entry

There are 2 chains in PDB entry 6DCR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 731
B	PRO 2	VAL 3

There are 43 helices in PDB entry 6DCR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	60	Right-handed 310
Helix 2	AA2	A	74	88	Right-handed alpha
Helix 3	AA3	A	91	99	Right-handed alpha
Helix 4	AA4	A	101	106	Right-handed alpha
Helix 5	AA5	A	200	213	Right-handed alpha
Helix 6	AA6	A	229	244	Right-handed alpha
Helix 7	AA7	A	258	269	Right-handed alpha
Helix 8	AA8	A	281	294	Right-handed alpha
Helix 9	AA9	A	304	309	Right-handed 310
Helix 10	AB1	A	324	328	Right-handed 310
Helix 11	AB2	A	336	349	Right-handed alpha
Helix 12	AB3	A	360	369	Right-handed alpha
Helix 13	AB4	A	404	417	Right-handed alpha
Helix 14	AB5	A	493	502	Right-handed alpha
Helix 15	AB6	A	558	565	Right-handed alpha
Helix 16	AB7	A	569	585	Right-handed alpha
Helix 17	AB8	A	603	613	Right-handed alpha
Helix 18	AB9	A	613	628	Right-handed alpha
Helix 19	AC1	A	647	662	Right-handed alpha
Helix 20	AC2	A	697	710	Right-handed alpha
Helix 21	AC3	A	711	720	Right-handed 310
Helix 22	AC4	B	56	60	Right-handed 310
Helix 23	AC5	B	74	89	Right-handed alpha
Helix 24	AC6	B	91	99	Right-handed alpha
Helix 25	AC7	B	101	106	Right-handed alpha
Helix 26	AC8	B	200	213	Right-handed alpha
Helix 27	AC9	B	229	243	Right-handed alpha
Helix 28	AD1	B	253	257	Right-handed 310
Helix 29	AD2	B	258	269	Right-handed alpha
Helix 30	AD3	B	281	294	Right-handed alpha
Helix 31	AD4	B	304	309	Right-handed 310
Helix 32	AD5	B	324	328	Right-handed 310
Helix 33	AD6	B	336	349	Right-handed alpha
Helix 34	AD7	B	360	369	Right-handed alpha
Helix 35	AD8	B	404	417	Right-handed alpha
Helix 36	AD9	B	494	502	Right-handed alpha
Helix 37	AE1	B	558	564	Right-handed alpha
Helix 38	AE2	B	569	586	Right-handed alpha
Helix 39	AE3	B	603	613	Right-handed alpha
Helix 40	AE4	B	613	628	Right-handed alpha
Helix 41	AE5	B	649	662	Right-handed alpha
Helix 42	AE6	B	697	710	Right-handed alpha
Helix 43	AE7	B	715	720	Right-handed 310

There are 12 sheets in PDB entry 6DCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	3	7	anti-parallel
Strand 3	A	40	50	anti-parallel
Strand 4	A	31	36	anti-parallel
Strand 5	A	65	66	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	299	302	parallel
Strand 3	A	247	251	parallel
Strand 4	A	314	320	parallel
Strand 5	A	351	356	parallel
Strand 6	A	218	223	parallel
Strand 7	A	373	376	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	393	first strand
Strand 2	A	593	598	parallel
Strand 3	A	551	556	parallel
Strand 4	A	420	424	parallel
Strand 5	A	534	538	parallel
Strand 6	A	507	509	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	436	first strand
Strand 2	A	484	487	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	455	first strand
Strand 2	A	460	462	anti-parallel
Strand 3	A	469	471	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	683	first strand
Strand 2	A	686	695	anti-parallel
Strand 3	A	635	643	anti-parallel
Strand 4	A	722	727	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	16	19	parallel
Strand 3	B	3	7	anti-parallel
Strand 4	B	40	50	anti-parallel
Strand 5	B	31	36	anti-parallel
Strand 6	B	65	66	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	299	302	parallel
Strand 3	B	247	251	parallel
Strand 4	B	314	320	parallel
Strand 5	B	351	356	parallel
Strand 6	B	218	223	parallel
Strand 7	B	373	376	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	393	first strand
Strand 2	B	593	598	parallel
Strand 3	B	551	556	parallel
Strand 4	B	420	424	parallel
Strand 5	B	535	538	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	436	first strand
Strand 2	B	484	487	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	455	first strand
Strand 2	B	460	462	anti-parallel
Strand 3	B	469	471	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	673	first strand
Strand 2	B	691	695	anti-parallel
Strand 3	B	635	640	anti-parallel
Strand 4	B	724	727	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DCR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCR