Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DCX entry

There are 4 chains in PDB entry 6DCX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 8	ASN 324
B	ASN 8	ALA 328
C	ARG 622	LYS 822
D	ARG 608	LYS 822

There are 42 helices in PDB entry 6DCX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	17	Right-handed alpha
Helix 2	AA2	A	18	22	Right-handed 310
Helix 3	AA3	A	31	49	Right-handed alpha
Helix 4	AA4	A	68	80	Right-handed alpha
Helix 5	AA5	A	99	114	Right-handed alpha
Helix 6	AA6	A	127	132	Right-handed alpha
Helix 7	AA7	A	135	144	Right-handed alpha
Helix 8	AA8	A	145	157	Right-handed alpha
Helix 9	AA9	A	183	188	Right-handed alpha
Helix 10	AB1	A	199	207	Right-handed alpha
Helix 11	AB2	A	228	240	Right-handed alpha
Helix 12	AB3	A	271	275	Right-handed 310
Helix 13	AB4	B	9	18	Right-handed alpha
Helix 14	AB5	B	19	22	Right-handed 310
Helix 15	AB6	B	31	49	Right-handed alpha
Helix 16	AB7	B	68	80	Right-handed alpha
Helix 17	AB8	B	99	114	Right-handed alpha
Helix 18	AB9	B	127	132	Right-handed alpha
Helix 19	AC1	B	135	144	Right-handed alpha
Helix 20	AC2	B	145	157	Right-handed alpha
Helix 21	AC3	B	183	188	Right-handed alpha
Helix 22	AC4	B	199	207	Right-handed alpha
Helix 23	AC5	B	228	239	Right-handed alpha
Helix 24	AC6	B	271	275	Right-handed 310
Helix 25	AC7	C	626	638	Right-handed alpha
Helix 26	AC8	C	639	650	Right-handed alpha
Helix 27	AC9	C	662	670	Right-handed alpha
Helix 28	AD1	C	672	682	Right-handed alpha
Helix 29	AD2	C	695	703	Right-handed alpha
Helix 30	AD3	C	705	714	Right-handed alpha
Helix 31	AD4	C	730	734	Right-handed 310
Helix 32	AD5	C	740	755	Right-handed alpha
Helix 33	AD6	C	758	760	Right-handed 310
Helix 34	AD7	D	626	638	Right-handed alpha
Helix 35	AD8	D	639	650	Right-handed alpha
Helix 36	AD9	D	662	670	Right-handed alpha
Helix 37	AE1	D	672	682	Right-handed alpha
Helix 38	AE2	D	695	703	Right-handed alpha
Helix 39	AE3	D	705	714	Right-handed alpha
Helix 40	AE4	D	730	734	Right-handed 310
Helix 41	AE5	D	740	755	Right-handed alpha
Helix 42	AE6	D	757	760	Right-handed 310

There are 8 sheets in PDB entry 6DCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	162	165	parallel
Strand 3	A	169	172	anti-parallel
Strand 4	A	243	246	parallel
Strand 5	A	263	266	parallel
Strand 6	A	255	258	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	87	89	parallel
Strand 3	A	59	62	parallel
Strand 4	A	280	285	anti-parallel
Strand 5	A	290	296	anti-parallel
Strand 6	D	624	625	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	225	227	parallel
Strand 3	A	216	218	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	162	165	parallel
Strand 3	B	169	172	anti-parallel
Strand 4	B	243	246	parallel
Strand 5	B	263	266	parallel
Strand 6	B	255	258	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	87	89	parallel
Strand 3	B	59	62	parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	290	296	anti-parallel
Strand 6	C	624	625	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	225	227	parallel
Strand 3	B	216	218	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	806	811	first strand
Strand 2	C	798	803	anti-parallel
Strand 3	C	784	789	anti-parallel
Strand 4	C	762	765	anti-parallel
Strand 5	C	815	816	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	806	811	first strand
Strand 2	D	798	803	anti-parallel
Strand 3	D	784	789	anti-parallel
Strand 4	D	762	765	anti-parallel
Strand 5	D	815	816	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DCX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DCX