Analysis of interatomic Contacts of Structural Units in PDB entry:
6DD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DD2 entry

There are 2 chains in PDB entry 6DD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ILE 451
B
 ILE 3ILE 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6DD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 30Right-handed alpha
Helix 2
AA2
A
57 66Right-handed alpha
Helix 3
AA3
A
69 74Right-handed 310
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
115 121Right-handed 310
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
161 177Right-handed alpha
Helix 8
AA8
A
188 193Right-handed 310
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
249 259Right-handed alpha
Helix 11
AB2
A
270 287Right-handed alpha
Helix 12
AB3
A
329 335Right-handed alpha
Helix 13
AB4
A
336 349Right-handed alpha
Helix 14
AB5
A
352 364Right-handed alpha
Helix 15
AB6
A
440 449Right-handed alpha
Helix 16
AB7
B
25 29Right-handed 310
Helix 17
AB8
B
56 64Right-handed alpha
Helix 18
AB9
B
69 74Right-handed 310
Helix 19
AC1
B
104 109Right-handed alpha
Helix 20
AC2
B
117 122Right-handed 310
Helix 21
AC3
B
130 134Right-handed 310
Helix 22
AC4
B
161 177Right-handed alpha
Helix 23
AC5
B
204 208Right-handed 310
Helix 24
AC6
B
251 258Right-handed alpha
Helix 25
AC7
B
271 287Right-handed alpha
Helix 26
AC8
B
329 333Right-handed alpha
Helix 27
AC9
B
337 350Right-handed alpha
Helix 28
AD1
B
352 365Right-handed alpha
Helix 29
AD2
B
440 448Right-handed alpha
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There are 8 sheets in PDB entry 6DD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
137 143parallel
Strand 4
A
149 155anti-parallel
Strand 5
A
37 42anti-parallel
Strand 6
A
406 408anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
75 78anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 248first strand
Strand 2
A
430 436anti-parallel
Strand 3
A
417 420anti-parallel
Strand 4
A
384 388parallel
Strand 5
A
294 301parallel
Strand 6
A
321 323anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 248first strand
Strand 2
A
430 436anti-parallel
Strand 3
A
417 420anti-parallel
Strand 4
A
384 388parallel
Strand 5
A
294 301parallel
Strand 6
A
326 328anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
93 99anti-parallel
Strand 3
B
137 144parallel
Strand 4
B
148 156anti-parallel
Strand 5
B
35 42anti-parallel
Strand 6
B
406 408anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
75 78anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 248first strand
Strand 2
B
430 436anti-parallel
Strand 3
B
417 421anti-parallel
Strand 4
B
384 388parallel
Strand 5
B
294 302parallel
Strand 6
B
320 323anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 248first strand
Strand 2
B
430 436anti-parallel
Strand 3
B
417 421anti-parallel
Strand 4
B
384 388parallel
Strand 5
B
294 302parallel
Strand 6
B
326 328anti-parallel
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