Analysis of interatomic Contacts of Structural Units in PDB entry:
6DD5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DD5 entry

There are 2 chains in PDB entry 6DD5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	ALA 1294
B	ILE 3	MET 1278

There are 57 helices in PDB entry 6DD5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	33	Right-handed alpha
Helix 2	AA2	A	43	53	Right-handed alpha
Helix 3	AA3	A	67	74	Right-handed alpha
Helix 4	AA4	A	83	88	Right-handed alpha
Helix 5	AA5	A	91	98	Right-handed alpha
Helix 6	AA6	A	129	131	Right-handed 310
Helix 7	AA7	A	132	143	Right-handed alpha
Helix 8	AA8	A	154	165	Right-handed alpha
Helix 9	AA9	A	186	202	Right-handed alpha
Helix 10	AB1	A	210	220	Right-handed alpha
Helix 11	AB2	A	229	231	Right-handed 310
Helix 12	AB3	A	232	240	Right-handed alpha
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	287	298	Right-handed alpha
Helix 15	AB6	A	305	313	Right-handed alpha
Helix 16	AB7	A	315	328	Right-handed alpha
Helix 17	AB8	A	336	353	Right-handed alpha
Helix 18	AB9	A	357	370	Right-handed alpha
Helix 19	AC1	A	1004	1009	Right-handed alpha
Helix 20	AC2	A	1033	1044	Right-handed alpha
Helix 21	AC3	A	1082	1095	Right-handed alpha
Helix 22	AC4	A	1130	1134	Right-handed 310
Helix 23	AC5	A	1138	1152	Right-handed alpha
Helix 24	AC6	A	1177	1182	Right-handed 310
Helix 25	AC7	A	1185	1189	Right-handed 310
Helix 26	AC8	A	1190	1211	Right-handed alpha
Helix 27	AC9	A	1263	1277	Right-handed alpha
Helix 28	AD1	A	1281	1285	Right-handed 310
Helix 29	AD2	B	17	33	Right-handed alpha
Helix 30	AD3	B	43	53	Right-handed alpha
Helix 31	AD4	B	67	74	Right-handed alpha
Helix 32	AD5	B	83	89	Right-handed alpha
Helix 33	AD6	B	91	98	Right-handed alpha
Helix 34	AD7	B	129	131	Right-handed 310
Helix 35	AD8	B	132	142	Right-handed alpha
Helix 36	AD9	B	154	165	Right-handed alpha
Helix 37	AE1	B	186	202	Right-handed alpha
Helix 38	AE2	B	210	220	Right-handed alpha
Helix 39	AE3	B	229	231	Right-handed 310
Helix 40	AE4	B	232	240	Right-handed alpha
Helix 41	AE5	B	273	284	Right-handed alpha
Helix 42	AE6	B	287	298	Right-handed alpha
Helix 43	AE7	B	305	313	Right-handed alpha
Helix 44	AE8	B	315	328	Right-handed alpha
Helix 45	AE9	B	336	353	Right-handed alpha
Helix 46	AF1	B	357	371	Right-handed alpha
Helix 47	AF2	B	1004	1011	Right-handed alpha
Helix 48	AF3	B	1033	1044	Right-handed alpha
Helix 49	AF4	B	1049	1052	Right-handed 310
Helix 50	AF5	B	1082	1095	Right-handed alpha
Helix 51	AF6	B	1130	1134	Right-handed 310
Helix 52	AF7	B	1138	1152	Right-handed alpha
Helix 53	AF8	B	1177	1182	Right-handed 310
Helix 54	AF9	B	1185	1189	Right-handed 310
Helix 55	AG1	B	1190	1211	Right-handed alpha
Helix 56	AG2	B	1263	1277	Right-handed alpha
Helix 57	AG3	B	1281	1285	Right-handed 310

There are 16 sheets in PDB entry 6DD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	8	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	106	112	anti-parallel
Strand 6	A	302	303	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	8	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	103	104	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	223	228	parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	243	246	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	173	first strand
Strand 2	A	176	183	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1054	1058	first strand
Strand 2	A	1071	1078	anti-parallel
Strand 3	A	1014	1022	anti-parallel
Strand 4	A	1114	1121	anti-parallel
Strand 5	A	1126	1128	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1026	1028	first strand
Strand 2	A	1064	1066	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1223	1232	first strand
Strand 2	A	1249	1257	anti-parallel
Strand 3	A	1154	1159	anti-parallel
Strand 4	A	1289	1292	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	8	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	259	267	anti-parallel
Strand 5	B	106	112	anti-parallel
Strand 6	B	302	303	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	8	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	259	267	anti-parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	223	228	parallel
Strand 3	B	115	119	anti-parallel
Strand 4	B	243	246	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	173	first strand
Strand 2	B	176	183	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1054	1058	first strand
Strand 2	B	1071	1078	anti-parallel
Strand 3	B	1014	1022	anti-parallel
Strand 4	B	1114	1121	anti-parallel
Strand 5	B	1126	1128	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1026	1027	first strand
Strand 2	B	1065	1066	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1223	1232	first strand
Strand 2	B	1249	1257	anti-parallel
Strand 3	B	1154	1159	anti-parallel
Strand 4	B	1289	1292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DD5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DD5