Analysis of interatomic Contacts of Structural Units in PDB entry:
6DD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DD7 entry

There are 4 chains in PDB entry 6DD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 14	GLY 381
B	PRO 14	GLY 381
C	PRO 14	GLY 381
D	PRO 14	CYS 231

There are 24 helices in PDB entry 6DD7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	65	Right-handed 310
Helix 2	AA2	A	115	118	Right-handed 310
Helix 3	AA3	A	167	170	Right-handed 310
Helix 4	AA4	A	271	274	Right-handed 310
Helix 5	AA5	A	375	378	Right-handed 310
Helix 6	AA6	B	62	65	Right-handed 310
Helix 7	AA7	B	95	99	Right-handed 310
Helix 8	AA8	B	115	118	Right-handed 310
Helix 9	AA9	B	167	170	Right-handed 310
Helix 10	AB1	B	271	274	Right-handed 310
Helix 11	AB2	B	324	328	Right-handed 310
Helix 12	AB3	C	62	65	Right-handed 310
Helix 13	AB4	C	95	99	Right-handed 310
Helix 14	AB5	C	114	118	Right-handed 310
Helix 15	AB6	C	167	170	Right-handed 310
Helix 16	AB7	C	271	274	Right-handed 310
Helix 17	AB8	C	324	328	Right-handed 310
Helix 18	AB9	D	62	65	Right-handed 310
Helix 19	AC1	D	95	99	Right-handed 310
Helix 20	AC2	D	115	118	Right-handed 310
Helix 21	AC3	D	167	170	Right-handed 310
Helix 22	AC4	D	271	276	Right-handed 310
Helix 23	AC5	D	324	328	Right-handed 310
Helix 24	AC6	D	375	378	Right-handed 310

There are 28 sheets in PDB entry 6DD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	26	31	anti-parallel
Strand 3	A	35	40	anti-parallel
Strand 4	A	55	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	78	80	anti-parallel
Strand 3	A	90	93	anti-parallel
Strand 4	A	108	113	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	127	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	141	145	anti-parallel
Strand 4	A	160	165	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	179	first strand
Strand 2	A	183	188	anti-parallel
Strand 3	A	193	197	anti-parallel
Strand 4	A	212	217	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	264	269	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	283	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	316	322	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	335	first strand
Strand 2	A	339	344	anti-parallel
Strand 3	A	349	353	anti-parallel
Strand 4	A	368	373	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	26	31	anti-parallel
Strand 3	B	36	40	anti-parallel
Strand 4	B	55	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	74	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	89	93	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	160	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	179	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	193	197	anti-parallel
Strand 4	B	212	217	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	316	321	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	335	first strand
Strand 2	B	339	344	anti-parallel
Strand 3	B	349	353	anti-parallel
Strand 4	B	368	373	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	26	31	anti-parallel
Strand 3	C	35	40	anti-parallel
Strand 4	C	55	60	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	74	first strand
Strand 2	C	78	83	anti-parallel
Strand 3	C	88	93	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	127	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	141	145	anti-parallel
Strand 4	C	160	165	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	179	first strand
Strand 2	C	183	188	anti-parallel
Strand 3	C	193	197	anti-parallel
Strand 4	C	212	217	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	231	first strand
Strand 2	C	235	240	anti-parallel
Strand 3	C	245	249	anti-parallel
Strand 4	C	264	269	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	283	first strand
Strand 2	C	287	292	anti-parallel
Strand 3	C	297	301	anti-parallel
Strand 4	C	316	321	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	335	first strand
Strand 2	C	339	344	anti-parallel
Strand 3	C	349	353	anti-parallel
Strand 4	C	368	373	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	22	first strand
Strand 2	D	26	31	anti-parallel
Strand 3	D	35	40	anti-parallel
Strand 4	D	55	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	74	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	88	93	anti-parallel
Strand 4	D	108	113	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	127	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	141	145	anti-parallel
Strand 4	D	160	165	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	179	first strand
Strand 2	D	183	188	anti-parallel
Strand 3	D	193	197	anti-parallel
Strand 4	D	212	217	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	231	first strand
Strand 2	D	235	240	anti-parallel
Strand 3	D	245	249	anti-parallel
Strand 4	D	264	269	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	283	first strand
Strand 2	D	287	292	anti-parallel
Strand 3	D	297	301	anti-parallel
Strand 4	D	316	322	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	335	first strand
Strand 2	D	339	344	anti-parallel
Strand 3	D	349	353	anti-parallel
Strand 4	D	368	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DD7