Analysis of interatomic Contacts of Structural Units in PDB entry:
6DDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DDA entry

There are 4 chains in PDB entry 6DDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 363PHE 598
A
 SER 363PHE 464
A
 ASN 466PHE 598
C
 SER 363PHE 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6DDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
363 375Right-handed alpha
Helix 2
AA2
B
390 396Right-handed alpha
Helix 3
AA3
B
398 423Right-handed alpha
Helix 4
AA4
B
426 430Right-handed 310
Helix 5
AA5
B
431 455Right-handed alpha
Helix 6
AA6
B
456 459Right-handed 310
Helix 7
AA7
B
472 480Right-handed alpha
Helix 8
AA8
B
481 495Right-handed alpha
Helix 9
AA9
B
499 512Right-handed alpha
Helix 10
AB1
B
520 543Right-handed alpha
Helix 11
AB2
B
548 580Right-handed alpha
Helix 12
AB3
B
585 596Right-handed alpha
Helix 13
AB4
A
364 375Right-handed alpha
Helix 14
AB5
A
400 423Right-handed alpha
Helix 15
AB6
A
426 430Right-handed 310
Helix 16
AB7
A
431 455Right-handed alpha
Helix 17
AB8
A
472 480Right-handed alpha
Helix 18
AB9
A
480 495Right-handed alpha
Helix 19
AC1
A
499 512Right-handed alpha
Helix 20
AC2
A
520 541Right-handed alpha
Helix 21
AC3
A
551 580Right-handed alpha
Helix 22
AC4
A
585 596Right-handed alpha
Helix 23
AC5
C
364 375Right-handed alpha
Helix 24
AC6
C
400 423Right-handed alpha
Helix 25
AC7
C
426 430Right-handed 310
Helix 26
AC8
C
431 455Right-handed alpha
Helix 27
AC9
C
472 480Right-handed alpha
Helix 28
AD1
C
481 495Right-handed alpha
Helix 29
AD2
C
499 512Right-handed alpha
Helix 30
AD3
C
520 541Right-handed alpha
Helix 31
AD4
C
548 557Right-handed alpha
Helix 32
AD5
C
557 580Right-handed alpha
Helix 33
AD6
C
585 596Right-handed alpha
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There are 3 sheets in PDB entry 6DDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 463first strand
Strand 2
B
469 471anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 463first strand
Strand 2
A
469 471anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
461 463first strand
Strand 2
C
469 471anti-parallel
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