Analysis of interatomic Contacts of Structural Units in PDB entry:
6DDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DDE entry

There are 7 chains in PDB entry 6DDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5PHE 354
B
 ASP 5ASN 340
C
 ILE 9PHE 61
E
 VAL 2LEU 235
R
 MET 65ARG 345
D
 TYR 1TYR 1
D
 GLY 3GLY 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6DDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 33Right-handed alpha
Helix 2
AA2
A
207 216Right-handed 310
Helix 3
AA3
A
242 255Right-handed alpha
Helix 4
AA4
A
256 260Right-handed 310
Helix 5
AA5
A
270 275Right-handed alpha
Helix 6
AA6
A
282 286Right-handed 310
Helix 7
AA7
A
295 309Right-handed alpha
Helix 8
AA8
A
330 352Right-handed alpha
Helix 9
AA9
B
6 25Right-handed alpha
Helix 10
AB1
C
11 24Right-handed alpha
Helix 11
AB2
C
29 33Right-handed 310
Helix 12
AB3
C
34 43Right-handed alpha
Helix 13
AB4
E
28 32Right-handed 310
Helix 14
AB5
E
87 91Right-handed 310
Helix 15
AB6
R
67 97Right-handed alpha
Helix 16
AB7
R
102 120Right-handed alpha
Helix 17
AB8
R
120 125Right-handed alpha
Helix 18
AB9
R
126 128Right-handed 310
Helix 19
AC1
R
136 171Right-handed alpha
Helix 20
AC2
R
171 179Right-handed alpha
Helix 21
AC3
R
180 205Right-handed alpha
Helix 22
AC4
R
227 241Right-handed alpha
Helix 23
AC5
R
241 260Right-handed alpha
Helix 24
AC6
R
269 294Right-handed alpha
Helix 25
AC7
R
294 306Right-handed alpha
Helix 26
AC8
R
313 339Right-handed alpha
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There are 16 sheets in PDB entry 6DDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
195 200anti-parallel
Strand 3
A
34 40parallel
Strand 4
A
220 226parallel
Strand 5
A
268 269parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
195 200anti-parallel
Strand 3
A
34 40parallel
Strand 4
A
220 226parallel
Strand 5
A
263 266parallel
Strand 6
A
319 321parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
336 339anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
70 72anti-parallel
Strand 3
B
78 82anti-parallel
Strand 4
B
89 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
111 113anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
134 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
176 181anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
198 202anti-parallel
Strand 3
B
207 212anti-parallel
Strand 4
B
220 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 262anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
295 298anti-parallel
Strand 4
B
304 307anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 320first strand
Strand 2
B
327 331anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
110 111anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 129first strand
Strand 2
E
143 149anti-parallel
Strand 3
E
199 204anti-parallel
Strand 4
E
191 196anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
134 136first strand
Strand 2
E
231 234parallel
Strand 3
E
214 219anti-parallel
Strand 4
E
162 167anti-parallel
Strand 5
E
174 178anti-parallel
Strand 6
E
182 183anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
134 136first strand
Strand 2
E
231 234parallel
Strand 3
E
214 219anti-parallel
Strand 4
E
226 227anti-parallel
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