Analysis of interatomic Contacts of Structural Units in PDB entry:
6DDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DDT entry

There is 1 chain in PDB entry 6DDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 18SER 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6DDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 55Right-handed alpha
Helix 2
AA2
A
65 70Right-handed alpha
Helix 3
AA3
A
70 76Right-handed alpha
Helix 4
AA4
A
89 93Right-handed 310
Helix 5
AA5
A
146 158Right-handed alpha
Helix 6
AA6
A
169 173Right-handed 310
Helix 7
AA7
A
177 181Right-handed 310
Helix 8
AA8
A
256 259Right-handed 310
Helix 9
AA9
A
363 367Right-handed 310
Helix 10
AB1
A
368 382Right-handed alpha
Helix 11
AB2
A
397 408Right-handed alpha
Helix 12
AB3
A
425 444Right-handed alpha
Helix 13
AB4
A
457 465Right-handed alpha
Helix 14
AB5
A
473 486Right-handed alpha
Helix 15
AB6
A
488 497Right-handed alpha
Helix 16
AB7
A
510 516Right-handed alpha
Helix 17
AB8
A
542 546Right-handed 310
Helix 18
AB9
A
562 568Right-handed alpha
Helix 19
AC1
A
569 570Right-handed 310
Helix 20
AC2
A
571 575Right-handed 310
Helix 21
AC3
A
579 586Right-handed alpha
Helix 22
AC4
A
590 601Right-handed alpha
Helix 23
AC5
A
610 640Right-handed alpha
Helix 24
AC6
A
678 688Right-handed alpha
Helix 25
AC7
A
754 760Right-handed alpha
Helix 26
AC8
A
792 796Right-handed 310
Helix 27
AC9
A
862 870Right-handed alpha
Helix 28
AD1
A
874 879Right-handed 310
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There are 14 sheets in PDB entry 6DDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
95 100anti-parallel
Strand 4
A
126 129anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
27 32anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
137 144anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
114 120anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
200 201anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
193 195anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 225first strand
Strand 2
A
230 241anti-parallel
Strand 3
A
274 280anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 268first strand
Strand 2
A
247 255anti-parallel
Strand 3
A
301 309anti-parallel
Strand 4
A
314 321anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
342 345anti-parallel
Strand 3
A
348 350anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
449 453parallel
Strand 3
A
410 414parallel
Strand 4
A
386 389parallel
Strand 5
A
352 357parallel
Strand 6
A
653 656parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
552 555parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
644 645first strand
Strand 2
A
648 649anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
691 698first strand
Strand 2
A
701 708anti-parallel
Strand 3
A
746 753anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 741first strand
Strand 2
A
714 724anti-parallel
Strand 3
A
769 774anti-parallel
Strand 4
A
786 789anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 811first strand
Strand 2
A
814 820anti-parallel
Strand 3
A
850 857anti-parallel
Strand 4
A
837 839anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
844 846first strand
Strand 2
A
825 831anti-parallel
Strand 3
A
871 873anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il