Analysis of interatomic Contacts of Structural Units in PDB entry:
6DE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DE6 entry

There are 2 chains in PDB entry 6DE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4PRO 692
B
 ARG 2PRO 692
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 6DE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed 310
Helix 2
AA2
A
37 52Right-handed alpha
Helix 3
AA3
A
79 81Right-handed 310
Helix 4
AA4
A
82 95Right-handed alpha
Helix 5
AA5
A
107 111Right-handed 310
Helix 6
AA6
A
142 163Right-handed alpha
Helix 7
AA7
A
177 184Right-handed alpha
Helix 8
AA8
A
197 202Right-handed alpha
Helix 9
AA9
A
202 217Right-handed alpha
Helix 10
AB1
A
238 249Right-handed alpha
Helix 11
AB2
A
262 267Right-handed alpha
Helix 12
AB3
A
278 283Right-handed alpha
Helix 13
AB4
A
284 289Right-handed 310
Helix 14
AB5
A
301 311Right-handed alpha
Helix 15
AB6
A
320 326Right-handed alpha
Helix 16
AB7
A
328 335Right-handed alpha
Helix 17
AB8
A
337 341Right-handed 310
Helix 18
AB9
A
348 356Right-handed alpha
Helix 19
AC1
A
370 375Right-handed alpha
Helix 20
AC2
A
396 410Right-handed alpha
Helix 21
AC3
A
423 430Right-handed alpha
Helix 22
AC4
A
435 438Right-handed 310
Helix 23
AC5
A
439 451Right-handed alpha
Helix 24
AC6
A
464 472Right-handed alpha
Helix 25
AC7
A
507 513Right-handed alpha
Helix 26
AC8
A
534 546Right-handed alpha
Helix 27
AC9
A
560 565Right-handed 310
Helix 28
AD1
A
568 579Right-handed alpha
Helix 29
AD2
A
625 634Right-handed alpha
Helix 30
AD3
A
637 642Right-handed alpha
Helix 31
AD4
A
650 653Right-handed 310
Helix 32
AD5
A
657 672Right-handed alpha
Helix 33
AD6
B
3 11Right-handed 310
Helix 34
AD7
B
37 51Right-handed alpha
Helix 35
AD8
B
79 81Right-handed 310
Helix 36
AD9
B
82 95Right-handed alpha
Helix 37
AE1
B
107 111Right-handed 310
Helix 38
AE2
B
142 163Right-handed alpha
Helix 39
AE3
B
176 184Right-handed alpha
Helix 40
AE4
B
197 202Right-handed alpha
Helix 41
AE5
B
202 217Right-handed alpha
Helix 42
AE6
B
244 250Right-handed alpha
Helix 43
AE7
B
283 289Right-handed alpha
Helix 44
AE8
B
302 311Right-handed alpha
Helix 45
AE9
B
320 326Right-handed alpha
Helix 46
AF1
B
328 335Right-handed alpha
Helix 47
AF2
B
337 341Right-handed 310
Helix 48
AF3
B
348 356Right-handed alpha
Helix 49
AF4
B
370 375Right-handed alpha
Helix 50
AF5
B
396 410Right-handed alpha
Helix 51
AF6
B
424 430Right-handed alpha
Helix 52
AF7
B
435 438Right-handed 310
Helix 53
AF8
B
439 451Right-handed alpha
Helix 54
AF9
B
464 472Right-handed alpha
Helix 55
AG1
B
507 513Right-handed alpha
Helix 56
AG2
B
534 546Right-handed alpha
Helix 57
AG3
B
560 565Right-handed 310
Helix 58
AG4
B
568 579Right-handed alpha
Helix 59
AG5
B
625 634Right-handed alpha
Helix 60
AG6
B
637 642Right-handed alpha
Helix 61
AG7
B
650 653Right-handed 310
Helix 62
AG8
B
657 672Right-handed alpha
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There are 14 sheets in PDB entry 6DE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
18 20anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
55 62parallel
Strand 3
A
99 105parallel
Strand 4
A
167 172parallel
Strand 5
A
221 227parallel
Strand 6
A
255 259parallel
Strand 7
A
293 295parallel
Strand 8
A
316 319parallel
Strand 9
A
24 26parallel
Strand 10
A
55 62parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
139 140parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
412 416parallel
Strand 3
A
389 393parallel
Strand 4
A
475 478parallel
Strand 5
A
645 648parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
621 623anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 506first strand
Strand 2
A
614 618parallel
Strand 3
A
524 529parallel
Strand 4
A
549 553parallel
Strand 5
A
582 584parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 592first strand
Strand 2
A
596 601anti-parallel
Strand 3
A
607 611anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
18 20anti-parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
55 62parallel
Strand 3
B
99 105parallel
Strand 4
B
167 172parallel
Strand 5
B
221 226parallel
Strand 6
B
255 258parallel
Strand 7
B
293 295parallel
Strand 8
B
316 319parallel
Strand 9
B
24 26parallel
Strand 10
B
55 62parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
139 140parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 458first strand
Strand 2
B
412 416parallel
Strand 3
B
389 393parallel
Strand 4
B
475 478parallel
Strand 5
B
645 648parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
621 623anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 506first strand
Strand 2
B
614 618parallel
Strand 3
B
524 529parallel
Strand 4
B
549 553parallel
Strand 5
B
582 584parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 592first strand
Strand 2
B
596 601anti-parallel
Strand 3
B
607 611anti-parallel
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