Analysis of interatomic Contacts of Structural Units in PDB entry:
6DE7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DE7 entry

There are 6 chains in PDB entry 6DE7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
VAL 518ASP 664
D
GLN 1VAL 211
E
SER 2GLU 210
G
GLU 32VAL 505
H
GLN 1PRO 211
L
THR 8HIS 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6DE7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
523 527Right-handed 310
Helix 2
AA2
B
529 534Right-handed alpha
Helix 3
AA3
B
536 541Right-handed alpha
Helix 4
AA4
B
542 545Right-handed 310
Helix 5
AA5
B
570 596Right-handed alpha
Helix 6
AA6
B
611 615Right-handed 310
Helix 7
AA7
B
618 623Right-handed alpha
Helix 8
AA8
B
627 636Right-handed alpha
Helix 9
AA9
B
638 664Right-handed alpha
Helix 10
AB1
D
28 32Right-handed 310
Helix 11
AB2
D
62 65Right-handed 310
Helix 12
AB3
D
83 87Right-handed 310
Helix 13
AB4
E
79 83Right-handed 310
Helix 14
AB5
E
182 186Right-handed 310
Helix 15
AB6
G
70 74Right-handed 310
Helix 16
AB7
G
98 116Right-handed alpha
Helix 17
AB8
G
335 350Right-handed alpha
Helix 18
AB9
G
368 373Right-handed alpha
Helix 19
AC1
G
426 429Right-handed 310
Helix 20
AC2
G
475 481Right-handed alpha
Helix 21
AC3
H
28 32Right-handed 310
Helix 22
AC4
H
53 55Right-handed 310
Helix 23
AC5
H
60 65Right-handed 310
Helix 24
AC6
H
83 87Right-handed 310
Helix 25
AC7
L
79 83Right-handed 310
Helix 26
AC8
L
122 127Right-handed alpha
Helix 27
AC9
L
182 189Right-handed alpha
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There are 32 sheets in PDB entry 6DE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
603 609first strand
Strand 2
G
35 40anti-parallel
Strand 3
G
494 499anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
5 6first strand
Strand 2
D
18 23anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
67 71anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 11first strand
Strand 2
D
107 110parallel
Strand 3
D
88 94anti-parallel
Strand 4
D
34 40anti-parallel
Strand 5
D
44 52anti-parallel
Strand 6
D
56 59anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 11first strand
Strand 2
D
107 110parallel
Strand 3
D
88 94anti-parallel
Strand 4
D
102 103anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
72 72first strand
Strand 2
D
73 75anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
121 123first strand
Strand 2
D
140 145anti-parallel
Strand 3
D
176 180anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
151 154first strand
Strand 2
D
195 200anti-parallel
Strand 3
D
205 210anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
5 6first strand
Strand 2
E
18 24anti-parallel
Strand 3
E
70 76anti-parallel
Strand 4
E
62 66anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
9 14first strand
Strand 2
E
102 106parallel
Strand 3
E
85 91anti-parallel
Strand 4
E
32 38anti-parallel
Strand 5
E
45 48anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
9 14first strand
Strand 2
E
102 106parallel
Strand 3
E
85 91anti-parallel
Strand 4
E
97 98anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
130 139first strand
Strand 2
E
172 180anti-parallel
Strand 3
E
159 161anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
130 139first strand
Strand 2
E
172 180anti-parallel
Strand 3
E
165 166anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
145 149first strand
Strand 2
E
191 196anti-parallel
Strand 3
E
202 206anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
45 47first strand
Strand 2
G
486 491anti-parallel
Strand 3
G
223 228anti-parallel
Strand 4
G
242 245anti-parallel
Strand 5
G
84 85anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
55 56first strand
Strand 2
G
75 76parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
91 94first strand
Strand 2
G
236 239anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
172 177first strand
Strand 2
G
154 159anti-parallel
Strand 3
G
129 133anti-parallel
Strand 4
G
190 193anti-parallel
Strand 5
G
181 183anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
202 203first strand
Strand 2
G
434 435parallel
Strand 3
G
423 424anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
259 261first strand
Strand 2
G
443 456anti-parallel
Strand 3
G
284 298anti-parallel
Strand 4
G
329 334anti-parallel
Strand 5
G
413 421anti-parallel
Strand 6
G
382 385anti-parallel
Strand 7
G
376 377anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
271 274first strand
Strand 2
G
284 298anti-parallel
Strand 3
G
443 456anti-parallel
Strand 4
G
466 470anti-parallel
Strand 5
G
359 361parallel
Strand 6
G
393 395anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
304 307first strand
Strand 2
G
317 320anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
105 109parallel
Strand 3
H
88 100anti-parallel
Strand 4
H
33 38anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 58anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
105 109parallel
Strand 3
H
88 100anti-parallel
Strand 4
H
100 100anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
119 122first strand
Strand 2
H
133 143anti-parallel
Strand 3
H
174 183anti-parallel
Strand 4
H
161 163anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
119 122first strand
Strand 2
H
133 143anti-parallel
Strand 3
H
174 183anti-parallel
Strand 4
H
167 168anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
149 152first strand
Strand 2
H
192 198anti-parallel
Strand 3
H
203 209anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 89anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 48anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
18 23first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
62 64anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
115 119first strand
Strand 2
L
131 138anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
160 162anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
115 119first strand
Strand 2
L
131 138anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
166 167anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
154 155first strand
Strand 2
L
145 151anti-parallel
Strand 3
L
192 198anti-parallel
Strand 4
L
201 207anti-parallel
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