Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DEB entry

There are 2 chains in PDB entry 6DEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1ASN 282
B
 ASN -1ASN 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6DEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 27Right-handed alpha
Helix 2
AA2
A
41 58Right-handed alpha
Helix 3
AA3
A
72 86Right-handed alpha
Helix 4
AA4
A
103 111Right-handed alpha
Helix 5
AA5
A
112 116Right-handed 310
Helix 6
AA6
A
121 130Right-handed alpha
Helix 7
AA7
A
138 151Right-handed alpha
Helix 8
AA8
A
169 180Right-handed alpha
Helix 9
AA9
A
193 199Right-handed alpha
Helix 10
AB1
A
215 219Right-handed 310
Helix 11
AB2
A
243 248Right-handed alpha
Helix 12
AB3
A
260 280Right-handed alpha
Helix 13
AB4
B
5 27Right-handed alpha
Helix 14
AB5
B
41 58Right-handed alpha
Helix 15
AB6
B
72 85Right-handed alpha
Helix 16
AB7
B
103 111Right-handed alpha
Helix 17
AB8
B
112 116Right-handed 310
Helix 18
AB9
B
121 130Right-handed alpha
Helix 19
AC1
B
138 151Right-handed alpha
Helix 20
AC2
B
169 180Right-handed alpha
Helix 21
AC3
B
193 199Right-handed alpha
Helix 22
AC4
B
215 219Right-handed 310
Helix 23
AC5
B
243 248Right-handed alpha
Helix 24
AC6
B
260 279Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6DEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
251 254parallel
Strand 3
A
223 227parallel
Strand 4
A
203 206parallel
Strand 5
A
159 163parallel
Strand 6
A
183 187parallel
Strand 7
B
183 187anti-parallel
Strand 8
B
159 163parallel
Strand 9
B
203 206parallel
Strand 10
B
223 227parallel
Strand 11
B
251 254parallel
Strand 12
B
2 3parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 67first strand
Strand 2
A
32 38parallel
Strand 3
A
91 94parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
238 239anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 67first strand
Strand 2
B
32 38parallel
Strand 3
B
91 94parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
238 239anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il