Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DEC entry

There are 8 chains in PDB entry 6DEC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	VAL 416
B	GLN 4	LYS 388
C	MET 1	ILE 371
D	MET 1	ASP 283
E	PRO 2	SER 174
F	ALA 3	ASN 167
G	GLY 36	VAL 151
M	CYS 376	ILE 537

There are172 helices in PDB entry 6DEC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	67	Right-handed 310
Helix 2	AA2	A	85	99	Right-handed alpha
Helix 3	AA3	A	119	133	Right-handed alpha
Helix 4	AA4	A	144	153	Right-handed alpha
Helix 5	AA5	A	196	212	Right-handed alpha
Helix 6	AA6	A	219	231	Right-handed alpha
Helix 7	AA7	A	239	248	Right-handed alpha
Helix 8	AA8	A	273	281	Right-handed alpha
Helix 9	AA9	A	284	288	Right-handed 310
Helix 10	AB1	A	295	306	Right-handed alpha
Helix 11	AB2	A	311	318	Right-handed alpha
Helix 12	AB3	A	323	327	Right-handed 310
Helix 13	AB4	A	330	353	Right-handed alpha
Helix 14	AB5	A	375	386	Right-handed alpha
Helix 15	AB6	A	388	394	Right-handed alpha
Helix 16	AB7	A	397	403	Right-handed alpha
Helix 17	AB8	A	404	409	Right-handed 310
Helix 18	AB9	B	81	93	Right-handed alpha
Helix 19	AC1	B	101	104	Right-handed 310
Helix 20	AC2	B	116	129	Right-handed alpha
Helix 21	AC3	B	141	148	Right-handed alpha
Helix 22	AC4	B	185	200	Right-handed alpha
Helix 23	AC5	B	209	221	Right-handed alpha
Helix 24	AC6	B	226	237	Right-handed alpha
Helix 25	AC7	B	256	261	Right-handed alpha
Helix 26	AC8	B	262	266	Right-handed 310
Helix 27	AC9	B	277	287	Right-handed alpha
Helix 28	AD1	B	293	298	Right-handed alpha
Helix 29	AD2	B	305	309	Right-handed 310
Helix 30	AD3	B	312	324	Right-handed alpha
Helix 31	AD4	B	334	338	Right-handed 310
Helix 32	AD5	B	349	351	Right-handed 310
Helix 33	AD6	B	352	365	Right-handed alpha
Helix 34	AD7	B	375	380	Right-handed alpha
Helix 35	AD8	C	232	234	Right-handed 310
Helix 36	AD9	C	359	366	Right-handed alpha
Helix 37	AE1	D	8	24	Right-handed alpha
Helix 38	AE2	D	48	51	Right-handed 310
Helix 39	AE3	D	63	69	Right-handed alpha
Helix 40	AE4	D	71	80	Right-handed alpha
Helix 41	AE5	D	81	84	Right-handed 310
Helix 42	AE6	D	106	114	Right-handed alpha
Helix 43	AE7	D	115	135	Right-handed alpha
Helix 44	AE8	D	171	187	Right-handed alpha
Helix 45	AE9	D	188	191	Right-handed 310
Helix 46	AF1	D	236	245	Right-handed alpha
Helix 47	AF2	D	246	279	Right-handed alpha
Helix 48	AF3	E	40	48	Right-handed alpha
Helix 49	AF4	E	48	53	Right-handed alpha
Helix 50	AF5	E	62	83	Right-handed alpha
Helix 51	AF6	E	87	101	Right-handed alpha
Helix 52	AF7	E	123	149	Right-handed alpha
Helix 53	AF8	E	157	162	Right-handed alpha
Helix 54	AF9	E	163	165	Right-handed 310
Helix 55	AG1	E	167	171	Right-handed 310
Helix 56	AG2	F	7	19	Right-handed alpha
Helix 57	AG3	F	36	41	Right-handed alpha
Helix 58	AG4	F	80	97	Right-handed alpha
Helix 59	AG5	F	98	100	Right-handed 310
Helix 60	AG6	F	120	125	Right-handed alpha
Helix 61	AG7	F	127	167	Right-handed alpha
Helix 62	AG8	G	38	49	Right-handed alpha
Helix 63	AG9	G	50	59	Right-handed alpha
Helix 64	AH1	G	68	85	Right-handed alpha
Helix 65	AH2	G	90	98	Right-handed alpha
Helix 66	AH3	G	99	115	Right-handed alpha
Helix 67	AH4	G	120	137	Right-handed alpha
Helix 68	AH5	G	137	147	Right-handed alpha
Helix 69	AH6	M	377	390	Right-handed alpha
Helix 70	AH7	M	406	424	Right-handed alpha
Helix 71	AH8	M	425	434	Right-handed alpha
Helix 72	AH9	M	434	451	Right-handed alpha
Helix 73	AI1	M	453	471	Right-handed alpha
Helix 74	AI2	M	471	481	Right-handed alpha
Helix 75	AI3	M	482	494	Right-handed alpha
Helix 76	AI4	M	497	512	Right-handed alpha
Helix 77	AI5	M	519	525	Right-handed 310
Helix 78	AI6	M	527	540	Right-handed alpha
Helix 79	AI7	M	550	562	Right-handed alpha
Helix 80	AI8	M	571	580	Right-handed alpha
Helix 81	AI9	M	584	597	Right-handed alpha
Helix 82	AJ1	M	612	622	Right-handed alpha
Helix 83	AJ2	M	624	629	Right-handed alpha
Helix 84	AJ3	M	632	650	Right-handed alpha
Helix 85	AJ4	M	655	668	Right-handed alpha
Helix 86	AJ5	M	679	692	Right-handed alpha
Helix 87	AJ6	M	697	710	Right-handed alpha
Helix 88	AJ7	H	62	66	Right-handed 310
Helix 89	AJ8	H	85	98	Right-handed alpha
Helix 90	AJ9	H	104	107	Right-handed 310
Helix 91	AK1	H	119	133	Right-handed alpha
Helix 92	AK2	H	144	153	Right-handed alpha
Helix 93	AK3	H	196	212	Right-handed alpha
Helix 94	AK4	H	219	231	Right-handed alpha
Helix 95	AK5	H	239	248	Right-handed alpha
Helix 96	AK6	H	273	281	Right-handed alpha
Helix 97	AK7	H	284	288	Right-handed 310
Helix 98	AK8	H	295	306	Right-handed alpha
Helix 99	AK9	H	311	318	Right-handed alpha
Helix 100	AL1	H	330	353	Right-handed alpha
Helix 101	AL2	H	375	385	Right-handed alpha
Helix 102	AL3	H	389	394	Right-handed alpha
Helix 103	AL4	H	397	403	Right-handed alpha
Helix 104	AL5	H	404	409	Right-handed 310
Helix 105	AL6	I	116	127	Right-handed alpha
Helix 106	AL7	I	142	146	Right-handed 310
Helix 107	AL8	I	185	194	Right-handed alpha
Helix 108	AL9	I	209	218	Right-handed alpha
Helix 109	AM1	I	226	237	Right-handed alpha
Helix 110	AM2	I	255	260	Right-handed 310
Helix 111	AM3	I	261	265	Right-handed 310
Helix 112	AM4	I	267	272	Right-handed 310
Helix 113	AM5	I	277	287	Right-handed alpha
Helix 114	AM6	I	306	310	Right-handed 310
Helix 115	AM7	I	314	325	Right-handed alpha
Helix 116	AM8	I	349	351	Right-handed 310
Helix 117	AM9	I	352	358	Right-handed alpha
Helix 118	AN1	J	230	234	Right-handed 310
Helix 119	AN2	J	361	366	Right-handed alpha
Helix 120	AN3	K	8	24	Right-handed alpha
Helix 121	AN4	K	48	51	Right-handed 310
Helix 122	AN5	K	63	69	Right-handed alpha
Helix 123	AN6	K	71	80	Right-handed alpha
Helix 124	AN7	K	105	114	Right-handed alpha
Helix 125	AN8	K	115	135	Right-handed alpha
Helix 126	AN9	K	171	187	Right-handed alpha
Helix 127	AO1	K	188	191	Right-handed 310
Helix 128	AO2	K	236	245	Right-handed alpha
Helix 129	AO3	K	246	279	Right-handed alpha
Helix 130	AO4	L	40	48	Right-handed alpha
Helix 131	AO5	L	48	53	Right-handed alpha
Helix 132	AO6	L	62	83	Right-handed alpha
Helix 133	AO7	L	87	100	Right-handed alpha
Helix 134	AO8	L	123	149	Right-handed alpha
Helix 135	AO9	L	157	162	Right-handed alpha
Helix 136	AP1	L	163	165	Right-handed 310
Helix 137	AP2	L	167	171	Right-handed 310
Helix 138	AP3	N	10	19	Right-handed alpha
Helix 139	AP4	N	36	41	Right-handed alpha
Helix 140	AP5	N	80	97	Right-handed alpha
Helix 141	AP6	N	120	126	Right-handed alpha
Helix 142	AP7	N	127	168	Right-handed alpha
Helix 143	AP8	O	38	49	Right-handed alpha
Helix 144	AP9	O	50	59	Right-handed alpha
Helix 145	AQ1	O	68	86	Right-handed alpha
Helix 146	AQ2	O	90	98	Right-handed alpha
Helix 147	AQ3	O	99	114	Right-handed alpha
Helix 148	AQ4	O	120	137	Right-handed alpha
Helix 149	AQ5	O	137	146	Right-handed alpha
Helix 150	AQ6	P	377	390	Right-handed alpha
Helix 151	AQ7	P	406	412	Right-handed alpha
Helix 152	AQ8	P	418	424	Right-handed alpha
Helix 153	AQ9	P	425	434	Right-handed alpha
Helix 154	AR1	P	434	451	Right-handed alpha
Helix 155	AR2	P	453	471	Right-handed alpha
Helix 156	AR3	P	471	481	Right-handed alpha
Helix 157	AR4	P	482	494	Right-handed alpha
Helix 158	AR5	P	497	512	Right-handed alpha
Helix 159	AR6	P	521	525	Right-handed 310
Helix 160	AR7	P	527	540	Right-handed alpha
Helix 161	AR8	P	549	562	Right-handed alpha
Helix 162	AR9	P	571	580	Right-handed alpha
Helix 163	AS1	P	584	597	Right-handed alpha
Helix 164	AS2	P	612	622	Right-handed alpha
Helix 165	AS3	P	624	629	Right-handed alpha
Helix 166	AS4	P	632	650	Right-handed alpha
Helix 167	AS5	P	655	671	Right-handed alpha
Helix 168	AS6	P	672	677	Right-handed alpha
Helix 169	AS7	P	681	693	Right-handed alpha
Helix 170	AS8	P	697	711	Right-handed alpha
Helix 171	AS9	Q	10	14	Right-handed alpha
Helix 172	AT1	R	16	23	Right-handed alpha

There are 42 sheets in PDB entry 6DEC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	109	114	parallel
Strand 5	A	138	143	parallel
Strand 6	A	395	396	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	191	193	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	165	169	anti-parallel
Strand 4	A	319	322	parallel
Strand 5	A	367	368	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	266	271	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	30	33	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	69	71	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	135	136	parallel
Strand 3	B	373	374	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	139	140	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	180	182	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	153	159	anti-parallel
Strand 4	B	301	304	parallel
Strand 5	B	344	345	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	251	254	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	344	349	anti-parallel
Strand 4	C	329	336	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	22	25	anti-parallel
Strand 3	C	32	37	anti-parallel
Strand 4	C	42	48	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	61	first strand
Strand 2	C	66	70	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	85	87	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	61	first strand
Strand 2	C	66	70	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	90	91	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	110	113	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	131	133	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	110	113	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	136	137	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	194	196	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	210	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	236	241	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	252	first strand
Strand 2	C	257	262	anti-parallel
Strand 3	C	268	273	anti-parallel
Strand 4	C	278	284	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	37	first strand
Strand 2	D	41	46	anti-parallel
Strand 3	D	54	60	anti-parallel
Strand 4	D	93	98	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	144	first strand
Strand 2	D	151	155	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	220	227	anti-parallel
Strand 5	D	197	201	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	60	65	anti-parallel
Strand 3	F	69	75	anti-parallel
Strand 4	F	114	119	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	16	21	anti-parallel
Strand 3	H	8	12	anti-parallel
Strand 4	H	109	114	parallel
Strand 5	H	138	143	parallel
Strand 6	H	395	396	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	37	first strand
Strand 2	H	73	75	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	176	177	first strand
Strand 2	H	191	192	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	180	181	first strand
Strand 2	H	184	185	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	254	259	first strand
Strand 2	H	266	271	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	319	320	first strand
Strand 2	H	367	368	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	242	245	first strand
Strand 2	I	251	254	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	38	first strand
Strand 2	J	41	44	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	67	68	first strand
Strand 2	J	78	79	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	126	first strand
Strand 2	J	131	135	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	207	209	first strand
Strand 2	J	218	220	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	251	254	first strand
Strand 2	J	257	260	anti-parallel
Strand 3	J	268	271	anti-parallel
Strand 4	J	280	284	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	345	347	first strand
Strand 2	J	355	357	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	32	37	first strand
Strand 2	K	41	46	anti-parallel
Strand 3	K	54	60	anti-parallel
Strand 4	K	93	98	anti-parallel
Strand 5	K	84	85	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	142	144	first strand
Strand 2	K	151	156	anti-parallel
Strand 3	K	161	168	anti-parallel
Strand 4	K	220	227	anti-parallel
Strand 5	K	197	201	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	51	54	first strand
Strand 2	N	60	65	anti-parallel
Strand 3	N	69	75	anti-parallel
Strand 4	N	117	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DEC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEC