Analysis of interatomic Contacts of Structural Units in PDB entry:
6DED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DED entry

There are 2 chains in PDB entry 6DED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 376ALA 720
B
 CYS 376PRO 721
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6DED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
376 391Right-handed alpha
Helix 2
AA2
A
400 405Right-handed 310
Helix 3
AA3
A
406 424Right-handed alpha
Helix 4
AA4
A
425 451Right-handed alpha
Helix 5
AA5
A
453 471Right-handed alpha
Helix 6
AA6
A
471 481Right-handed alpha
Helix 7
AA7
A
482 494Right-handed alpha
Helix 8
AA8
A
497 512Right-handed alpha
Helix 9
AA9
A
519 525Right-handed 310
Helix 10
AB1
A
527 540Right-handed alpha
Helix 11
AB2
A
549 563Right-handed alpha
Helix 12
AB3
A
571 579Right-handed alpha
Helix 13
AB4
A
583 597Right-handed alpha
Helix 14
AB5
A
612 622Right-handed alpha
Helix 15
AB6
A
624 629Right-handed alpha
Helix 16
AB7
A
632 650Right-handed alpha
Helix 17
AB8
A
656 671Right-handed alpha
Helix 18
AB9
A
672 677Right-handed alpha
Helix 19
AC1
A
679 692Right-handed alpha
Helix 20
AC2
A
697 714Right-handed alpha
Helix 21
AC3
A
715 718Right-handed 310
Helix 22
AC4
B
377 391Right-handed alpha
Helix 23
AC5
B
400 405Right-handed 310
Helix 24
AC6
B
406 424Right-handed alpha
Helix 25
AC7
B
425 451Right-handed alpha
Helix 26
AC8
B
453 471Right-handed alpha
Helix 27
AC9
B
471 481Right-handed alpha
Helix 28
AD1
B
482 494Right-handed alpha
Helix 29
AD2
B
497 512Right-handed alpha
Helix 30
AD3
B
519 525Right-handed 310
Helix 31
AD4
B
527 540Right-handed alpha
Helix 32
AD5
B
549 563Right-handed alpha
Helix 33
AD6
B
571 579Right-handed alpha
Helix 34
AD7
B
583 597Right-handed alpha
Helix 35
AD8
B
612 622Right-handed alpha
Helix 36
AD9
B
624 629Right-handed alpha
Helix 37
AE1
B
632 650Right-handed alpha
Helix 38
AE2
B
655 671Right-handed alpha
Helix 39
AE3
B
672 677Right-handed alpha
Helix 40
AE4
B
679 692Right-handed alpha
Helix 41
AE5
B
697 714Right-handed alpha
Helix 42
AE6
B
715 718Right-handed 310
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There are no sheets in PDB entry 6DED
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