Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DEF entry

There are 2 chains in PDB entry 6DEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9VAL 697
B
 THR 9ALA 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6DEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 36Right-handed alpha
Helix 2
AA2
A
55 65Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
127 144Right-handed alpha
Helix 5
AA5
A
185 199Right-handed alpha
Helix 6
AA6
A
214 217Right-handed 310
Helix 7
AA7
A
218 228Right-handed alpha
Helix 8
AA8
A
240 244Right-handed 310
Helix 9
AA9
A
250 255Right-handed alpha
Helix 10
AB1
A
272 278Right-handed alpha
Helix 11
AB2
A
281 296Right-handed alpha
Helix 12
AB3
A
302 306Right-handed 310
Helix 13
AB4
A
307 325Right-handed alpha
Helix 14
AB5
A
326 349Right-handed alpha
Helix 15
AB6
A
670 696Right-handed alpha
Helix 16
AB7
B
18 36Right-handed alpha
Helix 17
AB8
B
55 65Right-handed alpha
Helix 18
AB9
B
127 144Right-handed alpha
Helix 19
AC1
B
185 199Right-handed alpha
Helix 20
AC2
B
214 217Right-handed 310
Helix 21
AC3
B
218 228Right-handed alpha
Helix 22
AC4
B
240 244Right-handed 310
Helix 23
AC5
B
250 255Right-handed alpha
Helix 24
AC6
B
272 278Right-handed alpha
Helix 25
AC7
B
281 296Right-handed alpha
Helix 26
AC8
B
299 306Right-handed 310
Helix 27
AC9
B
307 325Right-handed alpha
Helix 28
AD1
B
326 346Right-handed alpha
Helix 29
AD2
B
672 696Right-handed alpha
Helix 30
AD3
C
18 36Right-handed alpha
Helix 31
AD4
C
55 65Right-handed alpha
Helix 32
AD5
C
127 144Right-handed alpha
Helix 33
AD6
C
185 199Right-handed alpha
Helix 34
AD7
C
214 217Right-handed 310
Helix 35
AD8
C
218 228Right-handed alpha
Helix 36
AD9
C
240 244Right-handed 310
Helix 37
AE1
C
250 255Right-handed alpha
Helix 38
AE2
C
272 278Right-handed alpha
Helix 39
AE3
C
281 296Right-handed alpha
Helix 40
AE4
C
299 306Right-handed 310
Helix 41
AE5
C
307 326Right-handed alpha
Helix 42
AE6
C
326 349Right-handed alpha
Helix 43
AE7
C
670 696Right-handed alpha
Helix 44
AE8
D
18 36Right-handed alpha
Helix 45
AE9
D
55 65Right-handed alpha
Helix 46
AF1
D
127 144Right-handed alpha
Helix 47
AF2
D
185 199Right-handed alpha
Helix 48
AF3
D
214 217Right-handed 310
Helix 49
AF4
D
218 228Right-handed alpha
Helix 50
AF5
D
240 244Right-handed 310
Helix 51
AF6
D
250 255Right-handed alpha
Helix 52
AF7
D
272 278Right-handed alpha
Helix 53
AF8
D
281 296Right-handed alpha
Helix 54
AF9
D
299 306Right-handed 310
Helix 55
AG1
D
307 325Right-handed alpha
Helix 56
AG2
D
326 338Right-handed alpha
Helix 57
AG3
D
684 695Right-handed alpha
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There are 4 sheets in PDB entry 6DEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
81 87parallel
Strand 4
A
167 170anti-parallel
Strand 5
A
46 50parallel
Strand 6
A
204 210parallel
Strand 7
A
234 239parallel
Strand 8
A
265 267parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 117first strand
Strand 2
B
154 160anti-parallel
Strand 3
B
81 87parallel
Strand 4
B
166 170anti-parallel
Strand 5
B
45 50parallel
Strand 6
B
203 210parallel
Strand 7
B
234 239parallel
Strand 8
B
265 267parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 117first strand
Strand 2
C
154 160anti-parallel
Strand 3
C
81 87parallel
Strand 4
C
166 170anti-parallel
Strand 5
C
45 50parallel
Strand 6
C
203 210parallel
Strand 7
C
234 239parallel
Strand 8
C
265 267parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 117first strand
Strand 2
D
154 160anti-parallel
Strand 3
D
81 87parallel
Strand 4
D
166 170anti-parallel
Strand 5
D
45 50parallel
Strand 6
D
203 210parallel
Strand 7
D
234 239parallel
Strand 8
D
265 267parallel
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