Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DEG entry

There are 2 chains in PDB entry 6DEG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 373
B
 HIS 0VAL 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6DEG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
71 81Right-handed alpha
Helix 3
AA3
A
114 118Right-handed 310
Helix 4
AA4
A
134 146Right-handed alpha
Helix 5
AA5
A
203 215Right-handed alpha
Helix 6
AA6
A
250 254Right-handed 310
Helix 7
AA7
A
267 278Right-handed alpha
Helix 8
AA8
A
279 282Right-handed 310
Helix 9
AA9
A
328 338Right-handed alpha
Helix 10
AB1
B
7 19Right-handed alpha
Helix 11
AB2
B
27 30Right-handed 310
Helix 12
AB3
B
71 81Right-handed alpha
Helix 13
AB4
B
114 118Right-handed 310
Helix 14
AB5
B
134 143Right-handed alpha
Helix 15
AB6
B
203 215Right-handed alpha
Helix 16
AB7
B
250 254Right-handed 310
Helix 17
AB8
B
267 278Right-handed alpha
Helix 18
AB9
B
328 338Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6DEG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
98 103anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
B
307 313anti-parallel
Strand 7
B
296 303anti-parallel
Strand 8
B
287 293anti-parallel
Strand 9
B
322 327anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
51 58anti-parallel
Strand 5
A
237 242anti-parallel
Strand 6
A
229 234anti-parallel
Strand 7
A
220 226anti-parallel
Strand 8
A
126 133anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
181 188anti-parallel
Strand 5
A
364 368anti-parallel
Strand 6
A
354 358anti-parallel
Strand 7
A
342 347anti-parallel
Strand 8
A
261 266anti-parallel
Strand 9
A
316 317anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 327first strand
Strand 2
A
287 293anti-parallel
Strand 3
A
296 303anti-parallel
Strand 4
A
307 313anti-parallel
Strand 5
B
106 111anti-parallel
Strand 6
B
98 103anti-parallel
Strand 7
B
86 91anti-parallel
Strand 8
B
2 6anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
51 58anti-parallel
Strand 5
B
237 242anti-parallel
Strand 6
B
229 233anti-parallel
Strand 7
B
220 225anti-parallel
Strand 8
B
128 133anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
170 178anti-parallel
Strand 4
B
181 188anti-parallel
Strand 5
B
364 368anti-parallel
Strand 6
B
354 357anti-parallel
Strand 7
B
342 347anti-parallel
Strand 8
B
261 266anti-parallel
Strand 9
B
315 317anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il