Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DEI entry

There are 4 chains in PDB entry 6DEI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 70LYS 181
B
 SER 71LYS 181
C
 SER 57ASP 80
D
 THR 63HIS 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6DEI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 83Right-handed alpha
Helix 2
AA2
A
138 141Right-handed 310
Helix 3
AA3
A
142 153Right-handed alpha
Helix 4
AA4
A
154 159Right-handed 310
Helix 5
AA5
A
164 166Right-handed 310
Helix 6
AA6
A
167 181Right-handed alpha
Helix 7
AA7
B
72 83Right-handed alpha
Helix 8
AA8
B
142 153Right-handed alpha
Helix 9
AA9
B
154 159Right-handed 310
Helix 10
AB1
B
167 180Right-handed alpha
Helix 11
AB2
C
64 68Right-handed 310
Helix 12
AB3
D
64 73Right-handed alpha
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There are 2 sheets in PDB entry 6DEI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
95 104anti-parallel
Strand 3
A
114 124anti-parallel
Strand 4
A
130 136anti-parallel
Strand 5
A
161 163anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 91first strand
Strand 2
B
96 103anti-parallel
Strand 3
B
115 122anti-parallel
Strand 4
B
131 136anti-parallel
Strand 5
B
161 164anti-parallel
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