Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DEP entry

There is 1 chain in PDB entry 6DEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 77TYR 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6DEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 101Right-handed alpha
Helix 2
AA2
A
111 113Right-handed 310
Helix 3
AA3
A
114 121Right-handed alpha
Helix 4
AA4
A
134 150Right-handed alpha
Helix 5
AA5
A
160 165Right-handed alpha
Helix 6
AA6
A
166 177Right-handed alpha
Helix 7
AA7
A
188 192Right-handed 310
Helix 8
AA8
A
201 206Right-handed alpha
Helix 9
AA9
A
207 210Right-handed 310
Helix 10
AB1
A
218 220Right-handed 310
Helix 11
AB2
A
221 235Right-handed alpha
Helix 12
AB3
A
247 252Right-handed alpha
Helix 13
AB4
A
261 264Right-handed 310
Helix 14
AB5
A
278 293Right-handed alpha
Helix 15
AB6
A
304 309Right-handed 310
Helix 16
AB7
A
311 324Right-handed alpha
Helix 17
AB8
A
353 363Right-handed alpha
Helix 18
AB9
A
374 379Right-handed alpha
Helix 19
AC1
A
380 384Right-handed 310
Helix 20
AC2
A
385 394Right-handed alpha
Helix 21
AC3
A
405 409Right-handed 310
Helix 22
AC4
A
422 431Right-handed alpha
Helix 23
AC5
A
432 434Right-handed 310
Helix 24
AC6
A
440 454Right-handed alpha
Helix 25
AC7
A
468 481Right-handed alpha
Helix 26
AC8
A
494 504Right-handed alpha
Helix 27
AC9
A
523 535Right-handed alpha
Helix 28
AD1
A
546 553Right-handed alpha
Helix 29
AD2
A
555 563Right-handed alpha
Helix 30
AD3
A
576 587Right-handed alpha
Helix 31
AD4
A
600 608Right-handed alpha
Helix 32
AD5
A
617 619Right-handed 310
Helix 33
AD6
A
620 631Right-handed alpha
Helix 34
AD7
A
664 679Right-handed alpha
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There are 4 sheets in PDB entry 6DEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
258 259anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
105 108parallel
Strand 3
A
153 157parallel
Strand 4
A
180 186parallel
Strand 5
A
240 246parallel
Strand 6
A
212 215parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
327 329parallel
Strand 3
A
298 302parallel
Strand 4
A
365 369parallel
Strand 5
A
398 403parallel
Strand 6
A
417 420parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 513first strand
Strand 2
A
487 491parallel
Strand 3
A
539 545parallel
Strand 4
A
567 572parallel
Strand 5
A
635 640parallel
Strand 6
A
611 615parallel
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